Browse Element(s) Details


OsAffx.30320.2.S1_x_at

Description tigr:9638.m00594
TID=OsAffx.30320.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Putative protein kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0678011/11Protein kinase domain containing protein
LOC_Os10g068006/11Protein kinase domain containing protein
LOC_Os10g069504/11Protein kinase domain containing protein
LOC_Os10g065802/11Protein kinase domain containing protein, expressed
LOC_Os10g065102/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g06740OsAffx.18157.1.S1_at11/1110+3484713..3488266Leucine Rich Repeat family protein, expressed
LOC_Os10g06740OsAffx.26258.3.S1_at1/1110+3484713..3488266Leucine Rich Repeat family protein, expressed
LOC_Os10g06750OsAffx.6591.1.S1_at11/1110+3491204..3496199hypothetical protein
LOC_Os10g06750OsAffx.528.1.S1_at1/1110+3491204..3496199hypothetical protein
LOC_Os10g06760Os.27570.1.S1_at11/1110+3499052..3502794Leucine Rich Repeat family protein, expressed
LOC_Os10g06770OsAffx.20728.1.S1_at11/1110+3509939..3510908hypothetical protein
LOC_Os10g06780OsAffx.30320.2.S1_x_at11/1110+3511322..3512248Protein kinase domain containing protein
LOC_Os10g06780OsAffx.30320.1.S1_x_at6/1110+3511322..3512248Protein kinase domain containing protein
LOC_Os10g06780Os.46721.1.S1_x_at2/1110+3511322..3512248Protein kinase domain containing protein
LOC_Os10g06790OsAffx.6593.1.S1_at10/1110+3514180..3517404hypothetical protein
LOC_Os10g06790Os.57157.1.S1_at4/1110+3514180..3517404hypothetical protein
LOC_Os10g06790OsAffx.31569.1.S1_x_at1/1110+3514180..3517404hypothetical protein
LOC_Os10g06800OsAffx.30320.1.S1_x_at11/1110+3522061..3523038Protein kinase domain containing protein
LOC_Os10g06800OsAffx.30320.2.S1_x_at6/1110+3522061..3523038Protein kinase domain containing protein
LOC_Os10g06800Os.46721.1.S1_x_at2/1110+3522061..3523038Protein kinase domain containing protein
LOC_Os10g06810OsAffx.20725.2.S1_at11/1110+3535385..3537759hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0006499biological_processN-terminal protein myristoylation
GO:0009738biological_processabscisic acid mediated signaling
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0004672molecular_functionprotein kinase activity
GO:0004685molecular_functioncalcium- and calmodulin-dependent protein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30320.2.S1_x_at--180--8433Chr10:3522482..3522506 (25 bp)
GGCCGGAGAAGCAAGTCCGCTTCAT
LOC_Os10g06800
OsAffx.30320.2.S1_x_at--925--2853Chr10:3522494..3522518 (25 bp)
AAGTCCGCTTCATGATGCGGCAGCT
LOC_Os10g06800
OsAffx.30320.2.S1_x_at--624--1431Chr10:3511788..3511812 (25 bp)
AGAACATCCTCAACAGCTTTGGCGA
LOC_Os10g06780
OsAffx.30320.2.S1_x_at--950--10231Chr10:3511805..3511829 (25 bp)
TTTGGCGACCTCAAGGTTTGCGACT
LOC_Os10g06780
OsAffx.30320.2.S1_x_at--163--2912Chr10:3511817..3511841 (25 bp)
AAGGTTTGCGACTTCGGCTCGGCGA
LOC_Os10g06780
OsAffx.30320.2.S1_x_at--815--1772Chr10:3511856..3511880 (25 bp)
ACCGGGAAGCCATACGAGGAGTGTT
LOC_Os10g06780
OsAffx.30320.2.S1_x_at--178--992Chr10:3511872..3511896 (25 bp)
AGGAGTGTTTGGTCGGCACCTTGCC
LOC_Os10g06780
OsAffx.30320.2.S1_x_at--713--5151Chr10:3511923..3511947 (25 bp)
GCAACCATTGCTACGGCCCGGGCGT
LOC_Os10g06780
OsAffx.30320.2.S1_x_at--83--4232Chr10:3511958..3511982 (25 bp)
CCGCTTGGCTGCATCATGGGCGAGC
LOC_Os10g06780
OsAffx.30320.2.S1_x_at--542--3254Chr10:3522858..3522882 (25 bp)
CAACGAGCTCTTCTATGATGTCCTG
LOC_Os10g06800
OsAffx.30320.2.S1_x_at--165--9574Chr10:3522866..3522890 (25 bp)
TCTTCTATGATGTCCTGCCGGAGCT
LOC_Os10g06800
Target Sequence 
GGCCGGAGAAGCAAGTCCGCTTCATGATGCGGCAGCTCGTCGGCGCCGCCAAGAAGATGCACGCCTCGCACGTCATCCAC
CGGGACATCAAGCCGGAGAACATCCTCAACAGCTTTGGCGACCTCAAGGTTTGCGACTTCGGCTCGGCGACGTTCGTCAA
CCCCACCGGGAAGCCATACGAGGAGTGTTTGGTCGGCACCTTGCCCTACACCTCGCCGGAGCAACTCGCCGGCAACCATT
GCTACGGCCCGGGCGTCGACATGTGGCCGCTTGGCTGCATCATGGGCGAGCTGCTCACCGGCGCGCCGCTGTTCGGAGGC
GACATGACGGAGAAGGAGCTGCTCGCCGACCTGTCCGCCAACCTGGACGACCAGCTCAACGAGCTCTTCTATGATGTCCT
GCCGGAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30320.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis