Browse Element(s) Details


OsAffx.30445.1.S1_at

Description tigr:9638.m01523
TID=OsAffx.30445.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g108501/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g10830Os.10561.1.S1_at11/117+5883650..5888229Dolichyl-diphosphooligosaccharide-protein glycosyltransferase 48kD subunit containing protein, expressed
LOC_Os07g10840Os.18257.1.S1_at11/117+5888859..5892428seed imbibition protein, putative, expressed
LOC_Os07g10850Os.33878.1.S1_at6/117+5910129..5922666retrotransposon protein, putative, unclassified
LOC_Os07g10850Os.55138.1.S1_x_at2/117+5910129..5922666retrotransposon protein, putative, unclassified
LOC_Os07g10850OsAffx.10665.2.S1_at1/117+5910129..5922666retrotransposon protein, putative, unclassified
LOC_Os07g10850OsAffx.10733.1.S1_at1/117+5910129..5922666retrotransposon protein, putative, unclassified
LOC_Os07g10850Os.36409.1.S1_x_at1/117+5910129..5922666retrotransposon protein, putative, unclassified
LOC_Os07g10850Os.27102.1.S1_x_at1/117+5910129..5922666retrotransposon protein, putative, unclassified
LOC_Os07g10850OsAffx.10733.1.S1_x_at1/117+5910129..5922666retrotransposon protein, putative, unclassified
LOC_Os07g10850Os.15501.2.S1_at1/117+5910129..5922666retrotransposon protein, putative, unclassified
LOC_Os07g10850OsAffx.30445.1.S1_at1/117+5910129..5922666retrotransposon protein, putative, unclassified
LOC_Os07g10860OsAffx.28395.1.S1_at11/117+5929313..5937569hypothetical protein
LOC_Os07g10860Os.25087.1.S1_at11/117+5929313..5937569hypothetical protein
LOC_Os07g10860Os.33702.1.S1_x_at1/117+5929313..5937569hypothetical protein
LOC_Os07g10870OsAffx.28397.2.S1_at11/117+5940174..5942039hypothetical protein
LOC_Os07g10880Os.17458.1.S1_at11/117+5943031..5944507expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30445.1.S1_at--724--7031Chr10:8976795..8976819 (25 bp)
GTAAACTATCTCGACGATCAGTACA
NONE
OsAffx.30445.1.S1_at--348--9651Chr10:8976778..8976802 (25 bp)
TCAGTACAATTTAAGCGCATCGCCA
NONE
OsAffx.30445.1.S1_at--917--10453Chr12:17945093..17945114 (22 bp)
TTACTTTTCTACTTTTTATCATCCG
NONE
OsAffx.30445.1.S1_at--160--10353Chr10:7138100..7138123 (24 bp)
TTTATCATCCGACAGAACTTGGCAC
NONE
OsAffx.30445.1.S1_at--250--191Chr10:8975470..8975494 (25 bp)
ATTTGCTACTGGACACCGAAAGATT
NONE
OsAffx.30445.1.S1_at--372--8516Chr09:20224115..20224138 (24 bp)
TGGACACCGAAAGATTACGGCCTTT
NONE
OsAffx.30445.1.S1_at--1126--131Chr10:8975448..8975472 (25 bp)
ATTACGGCCTTTGCTGTTGAGACAC
NONE
OsAffx.30445.1.S1_at--214--9111Chr10:8975437..8975461 (25 bp)
TGCTGTTGAGACACCCGAAGATCAT
NONE
OsAffx.30445.1.S1_at--790--6431Chr10:8975418..8975442 (25 bp)
GATCATGAATCTTTTCCGTGGACAC
NONE
OsAffx.30445.1.S1_at--511--5231Chr10:8975412..8975436 (25 bp)
GAATCTTTTCCGTGGACACTGGGAA
NONE
OsAffx.30445.1.S1_at--416--2292Chr11:6697904..6698169 (25 bp)
AAATGAGCTCAGATGCTAATTTTAA
NONE
Target Sequence 
GTAAACTATCTCGACGATCAGTACAATTTAAGCGCATCGCCACCCTTTTTACTTTTCTACTTTTTATCATCCGACAGAAC
TTGGCACCTAACGCGGGGCTACATCGGCTTTCGATCTCCGGCGAAGGGGACCAAACTGACTGGCAAAATTTGCTACTGGA
CACCGAAAGATTACGGCCTTTGCTGTTGAGACACCCGAAGATCATGAATCTTTTCCGTGGACACTGGGAAAAAATGAGCT
CAGATGCTAATTTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30445.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis