Browse Element(s) Details


OsAffx.30584.1.S1_at

Description tigr:9638.m02495
TID=OsAffx.30584.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=snRNP protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2926011/11BTB/POZ domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g29190Os.46819.2.S1_x_at1/1110+14875669..14876711BTB/POZ domain containing protein
LOC_Os10g29210NANA10+14879865..14881141retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g29220Os.46819.2.S1_x_at11/1110+14884294..14885732BTB/POZ domain containing protein, expressed
LOC_Os10g29220Os.46819.1.S1_at11/1110+14884294..14885732BTB/POZ domain containing protein, expressed
LOC_Os10g29230NANA10+14888861..14889970BTB/POZ domain containing protein, expressed
LOC_Os10g29240Os.35837.2.S1_x_at11/1110+14891416..14893725expressed protein
LOC_Os10g29240OsAffx.16386.1.S1_x_at4/1110+14891416..14893725expressed protein
LOC_Os10g29240OsAffx.16386.1.S1_at3/1110+14891416..14893725expressed protein
LOC_Os10g29250OsAffx.20323.1.S1_at11/1110+14895253..14895597hypothetical protein
LOC_Os10g29260OsAffx.30584.1.S1_at11/1110+14898764..14899728BTB/POZ domain containing protein
LOC_Os10g29260OsAffx.30585.1.S1_at1/1110+14898764..14899728BTB/POZ domain containing protein
LOC_Os10g29274Os.46319.1.S1_s_at11/1110+14900075..14905198expressed protein
LOC_Os10g29274Os.26733.3.S1_x_at11/1110+14900075..14905198expressed protein
LOC_Os10g29274Os.26733.2.S1_x_at11/1110+14900075..14905198expressed protein
LOC_Os10g29274Os.26733.1.S1_at7/1110+14900075..14905198expressed protein
LOC_Os10g29274OsAffx.5828.1.S1_x_at3/1110+14900075..14905198expressed protein
LOC_Os10g29274Os.52575.1.S1_x_at2/1110+14900075..14905198expressed protein
LOC_Os10g29290OsAffx.18441.1.S1_at11/1110+14910306..14911397BTB/POZ domain containing protein
LOC_Os10g29300OsAffx.20322.1.S1_at10/1110+14914015..14915082hypothetical protein
LOC_Os10g29310Os.46456.1.S1_at11/1110+14915615..14917080BTB/POZ domain containing protein, expressed
LOC_Os10g29320OsAffx.30585.1.S1_at1/1110+14919360..14921504BTB/POZ domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30584.1.S1_at--846--4211Chr10:14899331..14899355 (25 bp)
CCGCCGGAGCCGTGCACATCGAGGA
LOC_Os10g29260
OsAffx.30584.1.S1_at--899--2091Chr10:14899346..14899370 (25 bp)
ACATCGAGGACATTGAGCCGCGCGT
LOC_Os10g29260
OsAffx.30584.1.S1_at--952--51Chr10:14899357..14899381 (25 bp)
ATTGAGCCGCGCGTGTTCAAGGTGC
LOC_Os10g29260
OsAffx.30584.1.S1_at--589--1671Chr10:14899361..14899385 (25 bp)
AGCCGCGCGTGTTCAAGGTGCTGCT
LOC_Os10g29260
OsAffx.30584.1.S1_at--982--8671Chr10:14899508..14899532 (25 bp)
TGTGCAGGCACATTAGCGTCGGCAC
LOC_Os10g29260
OsAffx.30584.1.S1_at--423--931Chr10:14899513..14899537 (25 bp)
AGGCACATTAGCGTCGGCACGGTAT
LOC_Os10g29260
OsAffx.30584.1.S1_at--872--4011Chr10:14899524..14899548 (25 bp)
CGTCGGCACGGTATGGAACATCCTG
LOC_Os10g29260
OsAffx.30584.1.S1_at--675--2751Chr10:14899582..14899606 (25 bp)
AAGAAAGCGTGCTTCGATTTCCTCG
LOC_Os10g29260
OsAffx.30584.1.S1_at--454--4891Chr10:14899646..14899670 (25 bp)
GCTTCAAGCATCTTTGCAGGAGTTG
LOC_Os10g29260
OsAffx.30584.1.S1_at--651--2711Chr10:14899651..14899675 (25 bp)
AAGCATCTTTGCAGGAGTTGCCCCT
LOC_Os10g29260
OsAffx.30584.1.S1_at--784--3671Chr10:14899657..14899681 (25 bp)
CTTTGCAGGAGTTGCCCCTCTCTTA
LOC_Os10g29260
Target Sequence 
CCGCCGGAGCCGTGCACATCGAGGACATTGAGCCGCGCGTGTTCAAGGTGCTGCTCCGCTTCATGTACACCGACTCGCTC
CCGGAGATGGAGGAGGAAGACGTCATGTGCCAGCATCTGCTCGTCGCGGCGGACCGGTACAACCTCGAGAGGCTCAAGCT
GATCTGCGAGGAGAAGTTGTGCAGGCACATTAGCGTCGGCACGGTATGGAACATCCTGCCGCTGGCTGATCAGCACCACT
GTGACGGGCTGAAGAAAGCGTGCTTCGATTTCCTCGGCTCACTGGCAAACCTGAGTGCTGTCGTCGCCAGTGATGGCTTC
AAGCATCTTTGCAGGAGTTGCCCCTCTCTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30584.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis