Browse Element(s) Details


OsAffx.31069.4.S1_at

Description tigr:9635.m01447
TID=OsAffx.31069.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g145709/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g14530Os.35590.2.S1_at11/117+8280193..8284586pentatricopeptide, putative, expressed
LOC_Os07g14530Os.35590.3.S1_x_at10/117+8280193..8284586pentatricopeptide, putative, expressed
LOC_Os07g14530Os.35590.1.S1_x_at10/117+8280193..8284586pentatricopeptide, putative, expressed
LOC_Os07g14540Os.8775.1.S1_at11/117+8286140..8289457Vesicle-associated membrane protein 724, putative, expressed
LOC_Os07g14549NANA7+8291920..8292728NA
LOC_Os07g14560OsAffx.21161.1.S1_at1/117+8301301..8305674retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g14570OsAffx.31069.1.S1_x_at10/117+8306602..8311006hypothetical protein
LOC_Os07g14570OsAffx.31069.4.S1_at9/117+8306602..8311006hypothetical protein
LOC_Os07g14570OsAffx.31069.1.S1_at9/117+8306602..8311006hypothetical protein
LOC_Os07g14570OsAffx.31069.5.S1_at5/117+8306602..8311006hypothetical protein
LOC_Os07g14570Os.53479.1.S1_x_at3/117+8306602..8311006hypothetical protein
LOC_Os07g14570OsAffx.31069.5.S1_x_at3/117+8306602..8311006hypothetical protein
LOC_Os07g14570OsAffx.14745.1.S1_at2/117+8306602..8311006hypothetical protein
LOC_Os07g14580Os.17525.2.S1_x_at11/117+8314636..8319731Dcp1-like decapping family protein, expressed
LOC_Os07g14580Os.17525.1.S1_at11/117+8314636..8319731Dcp1-like decapping family protein, expressed
LOC_Os07g14590Os.11951.1.S1_at11/117+8319955..8323354IAA-amino acid hydrolase 1, putative, expressed
LOC_Os07g14600Os.29093.1.S1_at10/117+8324948..8326748Peptidase family M20/M25/M40 containing protein, expressed
LOC_Os07g14610Os.11833.1.S1_at11/117+8332674..8334026Peptidase family M20/M25/M40 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31069.4.S1_at--600--3911Chr07:8308651..8308675 (25 bp)
CTGGACGACGTGGACCAAAATCTGT
LOC_Os07g14570
OsAffx.31069.4.S1_at--814--1911Chr07:8308644..8308668 (25 bp)
ACGTGGACCAAAATCTGTCTGTGGA
LOC_Os07g14570
OsAffx.31069.4.S1_at--983--3751Chr07:8308338..8308362 (25 bp)
CTCGTACCTTTGGAGTTGTTGTACA
LOC_Os07g14570
OsAffx.31069.4.S1_at--92--10791Chr07:8308323..8308347 (25 bp)
TTGTTGTACAACCATGGCGGGAGTC
LOC_Os07g14570
OsAffx.31069.4.S1_at--575--10791Chr07:8308320..8308344 (25 bp)
TTGTACAACCATGGCGGGAGTCTGC
LOC_Os07g14570
OsAffx.31069.4.S1_at--234--3831NONE
CTGCGCCCAACTCGAAGTACTATGC
NONE
OsAffx.31069.4.S1_at--490--4371NONE
CCAACTCGAAGTACTATGCCGTTTG
NONE
OsAffx.31069.4.S1_at--132--6851Chr07:8306829..8306853 (25 bp)
GTTTGCCCTCTTGACCTATCCGTTG
LOC_Os07g14570
OsAffx.31069.4.S1_at--920--5831Chr07:8306817..8306841 (25 bp)
GACCTATCCGTTGCTCTGCGGGTGA
LOC_Os07g14570
OsAffx.31069.4.S1_at--954--551Chr07:8306812..8306836 (25 bp)
ATCCGTTGCTCTGCGGGTGAGAAAC
LOC_Os07g14570
OsAffx.31069.4.S1_at--848--3731Chr07:8306804..8306828 (25 bp)
CTCTGCGGGTGAGAAACAAAGGCGA
LOC_Os07g14570
Target Sequence 
CTGGACGACGTGGACCAAAATCTGTCTGTGGAAACGGGCATGGCGACGACTTCCTTAGACCTCGAGAGTGCGCTTGCCGA
CCGAGATCGTCGCATCCAATACTGGAGGACGAAGTTTGAGGTGGCAGAACTCGAGAGGACTATGTTAGAAGTGAACAAGG
ATCGGGCCGTGGAAGCACTCCGAGGTTGTGAGGTGTGGTTCAACTCGTACCTTTGGAGTTGTTGTACAACCATGGCGGGA
GTCTGCAAGGAACTCCGAGTACCTCGCGGGGATCCCGAGGAGTCTACGGCCGGATACATCTCATGGCTGAATGGGCCTGC
GCCCAACTCGAAGTACTATGCCGTTTGCCCTCTTGACCTATCCGTTGCTCTGCGGGTGAGAAACAAAGGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31069.4.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis