Browse Element(s) Details


OsAffx.31407.1.S1_at

Description tigr:9639.m03706
TID=OsAffx.31407.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=BTBPOZ domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4049011/11BTB/POZ domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g40460Os.27639.1.S1_x_at6/1111+23634286..23638246transposon protein, putative, unclassified
LOC_Os11g40460OsAffx.8980.1.S1_at5/1111+23634286..23638246transposon protein, putative, unclassified
LOC_Os11g40470OsAffx.22848.4.S1_at2/1111+23642187..23648131retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g40470OsAffx.22848.4.S1_x_at1/1111+23642187..23648131retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g40470OsAffx.22848.3.S1_x_at1/1111+23642187..23648131retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g40480Os.55081.1.S1_at11/1111+23659253..23660610expressed protein
LOC_Os11g40490OsAffx.31407.1.S1_at11/1111+23660696..23663612BTB/POZ domain containing protein, expressed
LOC_Os11g40490Os.29072.1.S1_at4/1111+23660696..23663612BTB/POZ domain containing protein, expressed
LOC_Os11g40490OsAffx.31407.2.S1_x_at1/1111+23660696..23663612BTB/POZ domain containing protein, expressed
LOC_Os11g40500Os.13577.1.S1_at10/1111+23665106..23668297signal peptidase I family protein, expressed
LOC_Os11g40510Os.8943.1.S1_at11/1111+23669386..23674277RNA recognition motif family protein, expressed
LOC_Os11g40520OsAffx.19275.1.S1_at11/1111+23677484..23677926hypothetical protein
LOC_Os11g40530Os.9671.1.S1_at11/1111+23679587..23680072nonspecific lipid-transfer protein 2, putative, expressed
LOC_Os11g40540Os.50236.1.S1_at11/1111+23683286..23690006Sugar transporter, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31407.1.S1_at--923--1911Chr11:23663101..23663125 (25 bp)
ACGTGGCGATCCACGTTGGCGGCGA
LOC_Os11g40490
OsAffx.31407.1.S1_at--1006--8471Chr11:23663197..23663221 (25 bp)
TGGCGATGAGCCGTCACAACAACGA
LOC_Os11g40490
OsAffx.31407.1.S1_at--79--6311Chr11:23663201..23663225 (25 bp)
GATGAGCCGTCACAACAACGAGGAG
LOC_Os11g40490
OsAffx.31407.1.S1_at--1048--5851Chr11:23663204..23663228 (25 bp)
GAGCCGTCACAACAACGAGGAGACA
LOC_Os11g40490
OsAffx.31407.1.S1_at--1138--4051Chr11:23663219..23663243 (25 bp)
CGAGGAGACAATCCGTGTCCACGAC
LOC_Os11g40490
OsAffx.31407.1.S1_at--131--4911Chr11:23663494..23663518 (25 bp)
GCTTCAAATTCATGGAGAATCCGAG
LOC_Os11g40490
OsAffx.31407.1.S1_at--957--5251Chr11:23663510..23663534 (25 bp)
GAATCCGAGTAATCTTAAGGCTGTC
LOC_Os11g40490
OsAffx.31407.1.S1_at--828--4231Chr11:23663514..23663538 (25 bp)
CCGAGTAATCTTAAGGCTGTCATGG
LOC_Os11g40490
OsAffx.31407.1.S1_at--962--9771Chr11:23663525..23663549 (25 bp)
TAAGGCTGTCATGGCGAGTGATGAT
LOC_Os11g40490
OsAffx.31407.1.S1_at--550--3491Chr11:23663534..23663558 (25 bp)
CATGGCGAGTGATGATTTTCTACAT
LOC_Os11g40490
OsAffx.31407.1.S1_at--18--8831Chr11:23663546..23663570 (25 bp)
TGATTTTCTACATCTGACAAGGAGC
LOC_Os11g40490
Target Sequence 
ACGTGGCGATCCACGTTGGCGGCGAGACGTTCGCGGCGCACCGGTGCGTGCTCGCCGCGCGGTCGCCGGTGTTCATGGCG
GAGCTCTTCGGCCCGATGGCGATGAGCCGTCACAACAACGAGGAGACAATCCGTGTCCACGACATGGAGCCGAGGGTGTT
CGAGGCCATGCTCCACTTCATCTACAACGACTCGTTGCCGGAGGTAGACGACGACGACGACGGCGAGGTGGCGGCCATGG
CGCAGCATCTGCTCGTCGCGGCGGACAGGTACGACATGGGGAGGCTGAAGCTGATCTGCGAGGACACGCTGTGCAGCCAC
GTCGACGCCAGCACGGCGGCGACGGCGTTGACGCTGGCCGAGCAGCATCACTGTGAGAGGCTCAAGGAGGCTTGCTTCAA
ATTCATGGAGAATCCGAGTAATCTTAAGGCTGTCATGGCGAGTGATGATTTTCTACATCTGACAAGGAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31407.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis