Browse Element(s) Details


OsAffx.31782.1.S1_at

Description tigr:9640.m01724
TID=OsAffx.31782.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1759010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g17540OsAffx.19718.1.S1_at11/1112+10050822..10052611Vignain precursor, putative
LOC_Os12g17550OsAffx.7619.1.S1_at11/1112+10056128..10065032Leucine Rich Repeat family protein, expressed
LOC_Os12g17550OsAffx.28164.2.S1_at1/1112+10056128..10065032Leucine Rich Repeat family protein, expressed
LOC_Os12g17560NANA12+10066226..10066525hypothetical protein
LOC_Os12g17570OsAffx.31781.1.S1_x_at11/1112+10067571..10069441GDSL-motif lipase/hydrolase, putative
LOC_Os12g17570Os.51561.1.S1_x_at6/1112+10067571..10069441GDSL-motif lipase/hydrolase, putative
LOC_Os12g17570Os.28229.2.S1_x_at1/1112+10067571..10069441GDSL-motif lipase/hydrolase, putative
LOC_Os12g17580OsAffx.17234.1.S1_at1/1112+10072714..10073298transposon protein, putative, unclassified
LOC_Os12g17590OsAffx.31782.1.S1_at10/1112+10075714..10077504expressed protein
LOC_Os12g17600Os.12594.1.S1_x_at9/1112+10077831..10079028Ribulose bisphosphate carboxylase small chain C, chloroplast precursor, putative, expressed
LOC_Os12g17600Os.39363.1.A1_x_at2/1112+10077831..10079028Ribulose bisphosphate carboxylase small chain C, chloroplast precursor, putative, expressed
LOC_Os12g17600Os.28218.1.S1_x_at1/1112+10077831..10079028Ribulose bisphosphate carboxylase small chain C, chloroplast precursor, putative, expressed
LOC_Os12g17610OsAffx.7621.1.S1_at11/1112+10082760..10083598hypothetical protein
LOC_Os12g17620Os.53142.1.S1_at3/1112+10085505..10090947retrotransposon protein, putative, unclassified
LOC_Os12g17620Os.23706.1.A1_x_at1/1112+10085505..10090947retrotransposon protein, putative, unclassified
LOC_Os12g17630Os.24831.3.S1_x_at7/1112+10095667..10098355retrotransposon protein, putative, unclassified
LOC_Os12g17630Os.24831.1.S1_x_at6/1112+10095667..10098355retrotransposon protein, putative, unclassified
LOC_Os12g17630Os.53142.1.S1_at3/1112+10095667..10098355retrotransposon protein, putative, unclassified
LOC_Os12g17630Os.24831.4.S1_x_at2/1112+10095667..10098355retrotransposon protein, putative, unclassified
LOC_Os12g17630Os.24831.3.S1_s_at1/1112+10095667..10098355retrotransposon protein, putative, unclassified
LOC_Os12g17630Os.23706.1.A1_x_at1/1112+10095667..10098355retrotransposon protein, putative, unclassified
LOC_Os12g17640NANA12+10100797..10103007retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31782.1.S1_at--432--1371NONE
AGAGCTAGCATGGAGCAACGGGCAT
NONE
OsAffx.31782.1.S1_at--432--5071Chr12:10076062..10076086 (25 bp)
GCAACGGGCATATTACTTCGTAATC
LOC_Os12g17590
OsAffx.31782.1.S1_at--761--7071Chr12:10076043..10076067 (25 bp)
GTAATCATCTCTGAAACTTGTCAAG
LOC_Os12g17590
OsAffx.31782.1.S1_at--969--2391Chr12:10076030..10076054 (25 bp)
AAACTTGTCAAGACGAGCAGCTCGA
LOC_Os12g17590
OsAffx.31782.1.S1_at--736--1511Chr12:10076015..10076039 (25 bp)
AGCAGCTCGACGACTCGAACGTGGA
LOC_Os12g17590
OsAffx.31782.1.S1_at--828--1891Chr12:10075997..10076021 (25 bp)
ACGTGGAGACCTTTCGGCGTTTGCT
LOC_Os12g17590
OsAffx.31782.1.S1_at--1004--4111Chr12:10075960..10075984 (25 bp)
CGCACTGGGTGCGAAGTCGAAGCCT
LOC_Os12g17590
OsAffx.31782.1.S1_at--1122--2651Chr12:10075941..10075965 (25 bp)
AAGCCTGAGCTGACCTTGCCGAGCA
LOC_Os12g17590
OsAffx.31782.1.S1_at--427--4131Chr12:10075871..10075895 (25 bp)
CGCGAGACCCGCACGATACAAGGAA
LOC_Os12g17590
OsAffx.31782.1.S1_at--923--1972Chr12:10075769..10075793 (25 bp)
ACTGCCGTTCGGTTTCGATGGATGA
LOC_Os12g17590
OsAffx.31782.1.S1_at--342--951Chr12:10075745..10075769 (25 bp)
AGGAAGCGGCAACTCTGCTTTGCGA
LOC_Os12g17590
Target Sequence 
AGAGCTAGCATGGAGCAACGGGCATATTACTTCGTAATCATCTCTGAAACTTGTCAAGACGAGCAGCTCGACGACTCGAA
CGTGGAGACCTTTCGGCGTTTGCTGCCCAGCAGCGACGCACTGGGTGCGAAGTCGAAGCCTGAGCTGACCTTGCCGAGCA
CGGACTGGAGCGCGTGGCGGACCGAGGCTATGGCGGCGGCGGCGTCGCGAGACCCGCACGATACAAGGAAGGCGAGCCTG
ACCTGGCCGCCCAGCGTGGTGACCTCCGAGCCGACCACCTCCAGCCCGAGCCTGAGTCGCGCTCTCCACTGCCGTTCGGT
TTCGATGGATGAGGAAGCGGCAACTCTGCTTTGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31782.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis