Browse Element(s) Details


OsAffx.32056.1.S1_x_at

Description gb:NM_196367.1
DB_XREF= gi:37534093
TID=OsAffx.32056.1
CNT=5
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative transposable element (OSJNBa0050N08.8), mRNA.
PROD=putative transposable element
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3520011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g3584011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g0798011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g1723011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g1334011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g0696011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g0918011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g2815011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g2835011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g0947011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g0933011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g1686011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g0295011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g2333011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g4611011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g3718010/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g3513010/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g3159010/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g2598010/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g0894010/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g0334010/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g0558010/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g297309/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g182109/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g161009/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g041809/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g267609/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g088168/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g059208/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g088088/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g272407/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g194507/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g171407/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g554807/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g161107/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g261107/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g215906/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g267205/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g293105/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g276705/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g431504/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g352702/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g35160Os.47962.1.S1_at11/111+19780987..19785158receptor-like protein kinase 4, putative, expressed
LOC_Os01g35160Os.47962.1.S1_x_at11/111+19780987..19785158receptor-like protein kinase 4, putative, expressed
LOC_Os01g35160Os.35785.1.S1_x_at8/111+19780987..19785158receptor-like protein kinase 4, putative, expressed
LOC_Os01g35160Os.35785.1.S1_at5/111+19780987..19785158receptor-like protein kinase 4, putative, expressed
LOC_Os01g35170Os.27235.1.S1_at11/111+19793154..19795861tRNA methyltransferase family protein, expressed
LOC_Os01g35170Os.27235.2.S1_x_at10/111+19793154..19795861tRNA methyltransferase family protein, expressed
LOC_Os01g35184Os.41019.1.S1_at11/111+19796109..19804437CBL-interacting serine/threonine-protein kinase 24, putative, expressed
LOC_Os01g35184OsAffx.8934.1.S1_x_at1/111+19796109..19804437CBL-interacting serine/threonine-protein kinase 24, putative, expressed
LOC_Os01g35200OsAffx.32056.1.S1_at11/111+19807511..19814522transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g35200OsAffx.32056.1.S1_x_at11/111+19807511..19814522transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g35200OsAffx.30536.1.S1_x_at1/111+19807511..19814522transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g35200OsAffx.8676.1.S1_at1/111+19807511..19814522transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g35210OsAffx.10637.3.S1_s_at11/111+19816033..19819719transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g35210OsAffx.10637.1.S1_s_at11/111+19816033..19819719transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g35210OsAffx.10637.4.S1_s_at8/111+19816033..19819719transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g35220Os.35344.3.S1_x_at10/111+19821591..19828758transposon protein, putative, Mutator sub-class
LOC_Os01g35220OsAffx.22940.3.S1_x_at9/111+19821591..19828758transposon protein, putative, Mutator sub-class
LOC_Os01g35220OsAffx.22940.2.S1_s_at8/111+19821591..19828758transposon protein, putative, Mutator sub-class
LOC_Os01g35220Os.35344.18.S1_x_at8/111+19821591..19828758transposon protein, putative, Mutator sub-class
LOC_Os01g35220OsAffx.22940.5.S1_x_at6/111+19821591..19828758transposon protein, putative, Mutator sub-class
LOC_Os01g35220OsAffx.22940.5.S1_at5/111+19821591..19828758transposon protein, putative, Mutator sub-class
LOC_Os01g35220OsAffx.22940.1.S1_s_at4/111+19821591..19828758transposon protein, putative, Mutator sub-class
LOC_Os01g35220OsAffx.22940.2.S1_at4/111+19821591..19828758transposon protein, putative, Mutator sub-class
LOC_Os01g35220OsAffx.31552.2.S1_at1/111+19821591..19828758transposon protein, putative, Mutator sub-class
LOC_Os01g35230Os.41016.1.S1_at11/111+19832380..19835214oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os01g35240OsAffx.23518.1.S1_at11/111+19836827..19838637hypothetical protein
LOC_Os01g35240OsAffx.23518.1.S1_s_at9/111+19836827..19838637hypothetical protein
LOC_Os01g35240Os.29072.1.S1_at4/111+19836827..19838637hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32056.1.S1_x_at--619--28138Chr12:22769907..22769931 (25 bp)
AAGATTGGCATGTGGGCCTTCAAGT
LOC_Os12g37180
OsAffx.32056.1.S1_x_at--1161--78937Chr12:22769965..22769989 (25 bp)
GGATTTACCTTGAGTACGACTACGA
LOC_Os12g37180
OsAffx.32056.1.S1_x_at--57--34734Chr12:22770015..22770039 (25 bp)
CAGTGGGATCCGTGTCGAAGCGATT
LOC_Os12g37180
OsAffx.32056.1.S1_x_at--863--2533Chr12:22770085..22770109 (25 bp)
ATATGGGAACTGGACTATGGCCTAA
LOC_Os12g37180
OsAffx.32056.1.S1_x_at--142--12930Chr12:22770116..22770140 (25 bp)
AGATCCCTGTGCTCCGTTGTGAATG
LOC_Os12g37180
OsAffx.32056.1.S1_x_at--526--78738Chr12:22770159..22770183 (25 bp)
GGTTTCCGTTGATGACTACGGGCTA
LOC_Os12g37180
OsAffx.32056.1.S1_x_at--735--98734Chr12:22770175..22770199 (25 bp)
TACGGGCTAACGATAGTCGATCACA
LOC_Os12g37180
OsAffx.32056.1.S1_x_at--216--53736Chr12:9192771..9192795 (25 bp)
GAAGACCCCAATGATTACAACCAGT
LOC_Os12g16100
OsAffx.32056.1.S1_x_at--959--43332Chr12:22770357..22770381 (25 bp)
CCAGTTCGACGATGTACCATTGTTT
LOC_Os12g37180
OsAffx.32056.1.S1_x_at--297--538Chr12:22770375..22770399 (25 bp)
ATTGTTTACTGATCTTCCTATGCGA
LOC_Os12g37180
OsAffx.32056.1.S1_x_at--1023--101138Chr12:22770435..22770459 (25 bp)
TATGTCGTACGTTCGAGCAGATGGT
LOC_Os12g37180
Target Sequence 
AAGATTGGCATGTGGGCCTTCAAGTATTGTCAATTCATGGCAAGGTTACGACATCAATGGATTTACCTTGAGTACGACTA
CGAAGGACATGAAAAGCACCNCACAAAACAGTGGGATCCGTGTCGAAGCGATTGACACGAGTGGAGAAAAGAGGTCGTAT
TATGGGACCATTCAAGAAATATGGGAACTGGACTATGGCCTAAACATCCAGATCCCTGTGCTCCGTTGTGAATGGGTTAA
AGACACAATAGGGGTTTCCGTTGATGACTACGGGCTAACGATAGTCGATCACAGTAAAACAGGCCACAAGGATGATCCAT
GGGTTTTAGCAGANCGTGTGGCTCANGTGTTTTATGTGAAGGACCCTTCAGATGAAAGAAAAACTATTGTCATATCCGGA
AAGCAACAGATCGTCGGCATCGACAACATCGAAGACCCCAATGATTACAACCAGTTCGACGATGTACCATTGTTTACTGA
TCTTCCTATGCGAATTAAGAAGGTTGAGAGAACAATCGATGAAGCAAATATGTCGTACGTTCGAGCAGATGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32056.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis