Browse Element(s) Details


OsAffx.32195.1.A1_at

Description gb:X15901.1
DB_XREF= gi:11957
GEN=rps3
TID=OsAffx.32195.1
CNT=1
FEA=DNA_66
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=ribosomal protein S3 (Oryza sativa (japonica cultivar-group)) chloroplast
PROD=ribosomal protein S3
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1677411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g16760OsAffx.32214.1.S1_x_at11/114+9107979..9110484Photosystem I P700 chlorophyll a apoprotein A1, putative, expressed
LOC_Os04g16760Os.26751.1.S1_s_at9/114+9107979..9110484Photosystem I P700 chlorophyll a apoprotein A1, putative, expressed
LOC_Os04g16770Os.46404.1.S1_x_at11/114+9116019..9117080Photosystem Q, putative, expressed
LOC_Os04g16774OsAffx.32196.1.A1_at11/114+9131675..9135405expressed protein
LOC_Os04g16774OsAffx.32199.1.S1_x_at11/114+9131675..9135405expressed protein
LOC_Os04g16774OsAffx.32287.1.A1_at11/114+9131675..9135405expressed protein
LOC_Os04g16774OsAffx.32195.1.A1_at11/114+9131675..9135405expressed protein
LOC_Os04g16774OsAffx.32200.1.A1_x_at11/114+9131675..9135405expressed protein
LOC_Os04g16774OsAffx.32197.1.A1_x_at11/114+9131675..9135405expressed protein
LOC_Os04g16774OsAffx.32233.1.A1_x_at9/114+9131675..9135405expressed protein
LOC_Os04g16774OsAffx.20465.1.A1_x_at6/114+9131675..9135405expressed protein
LOC_Os04g16780OsAffx.32287.1.S1_x_at11/114+9133179..9136938Chloroplast 30S ribosomal protein S3, putative, expressed
LOC_Os04g16780OsAffx.32337.1.S1_x_at11/114+9133179..9136938Chloroplast 30S ribosomal protein S3, putative, expressed
LOC_Os04g16780OsAffx.32196.1.S1_x_at11/114+9133179..9136938Chloroplast 30S ribosomal protein S3, putative, expressed
LOC_Os04g16780Os.46437.1.S1_s_at11/114+9133179..9136938Chloroplast 30S ribosomal protein S3, putative, expressed
LOC_Os04g16780Os.46267.1.S1_x_at11/114+9133179..9136938Chloroplast 30S ribosomal protein S3, putative, expressed
LOC_Os04g16780Os.26688.1.S1_s_at11/114+9133179..9136938Chloroplast 30S ribosomal protein S3, putative, expressed
LOC_Os04g16780OsAffx.32197.1.S1_x_at11/114+9133179..9136938Chloroplast 30S ribosomal protein S3, putative, expressed
LOC_Os04g16780OsAffx.32195.1.S1_x_at9/114+9133179..9136938Chloroplast 30S ribosomal protein S3, putative, expressed
LOC_Os04g16780OsAffx.32199.1.A1_x_at6/114+9133179..9136938Chloroplast 30S ribosomal protein S3, putative, expressed
LOC_Os04g16790OsAffx.32331.1.S1_x_at11/114+9138338..9141153DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os04g16790Os.26455.2.S1_s_at11/114+9138338..9141153DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os04g16790OsAffx.32330.1.A1_at11/114+9138338..9141153DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os04g16790Os.26455.1.S1_at11/114+9138338..9141153DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os04g16790OsAffx.32332.1.S1_x_at11/114+9138338..9141153DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os04g16790OsAffx.32333.1.S1_x_at11/114+9138338..9141153DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os04g16790OsAffx.32334.1.S1_x_at5/114+9138338..9141153DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os04g16800OsAffx.30473.1.S1_x_at11/114+9156196..9158627Photosystem II D2 protein, putative
LOC_Os04g16800OsAffx.30473.2.S1_x_at9/114+9156196..9158627Photosystem II D2 protein, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32195.1.A1_at--942--5198Chr10:10555194..10555218 (25 bp)
GCAATTTCTTTTCCCGCGAGACGGC
NONE
OsAffx.32195.1.A1_at--420--5998Chr10:10555211..10555235 (25 bp)
GAGACGGCCTGCAATTTTTACTTTT
NONE
OsAffx.32195.1.A1_at--987--10338Chr10:10555227..10555251 (25 bp)
TTTACTTTTACTCCCTTTATATCTG
NONE
OsAffx.32195.1.A1_at--505--2937Chr10:10555268..10555292 (25 bp)
AATGGCTTTTTTCATTGCCTTTCGG
NONE
OsAffx.32195.1.A1_at--812--3678Chr10:10555360..10555384 (25 bp)
CTTTCACTTTTTCGATCCCAATATT
NONE
OsAffx.32195.1.A1_at--675--10317Chr10:10555424..10555448 (25 bp)
TTTCTCTAATTCTTCGATTGCTCCT
NONE
OsAffx.32195.1.A1_at--700--9397Chr10:10555437..10555461 (25 bp)
TCGATTGCTCCTTTTTTCTTTAATA
NONE
OsAffx.32195.1.A1_at--474--10596Chr10:10555535..10555559 (25 bp)
TTCGGAACTTGAGCCTGAGTCCATT
NONE
OsAffx.32195.1.A1_at--684--7176Chr10:10555592..10555616 (25 bp)
GTCTGCTTCTATTTTTCTATTCGAG
NONE
OsAffx.32195.1.A1_at--698--10216Chr10:10555609..10555633 (25 bp)
TATTCGAGCCCTTTTTCCTATTCTT
NONE
OsAffx.32195.1.A1_at--245--10376Chr10:10555666..10555690 (25 bp)
TTTTATCTTCCTGTAGACCTTCAGA
NONE
Target Sequence 
GCAATTTCTTTTCCCGCGAGACGGCCTGCAATTTTTACTTTTACTCCCTTTATATCTGTTTTTTTAGTTAATTCAATGGC
TTTTTTCATTGCCTTTCGGAATGAAACTCTATTTTTTAATTGGAAAGCTATATATTCTGCAAGAATGTTAGGTTGTCTAT
AAGGTTCTTTCACTTTTTCGATCCCAATATTAAGTCTCTGGTTTACAGAATTAACTTCTTTTTGTAGATCTTTCTCTAAT
TCTTCGATTGCTCCTTTTTTCTTTAATAAATTGGGGAATCCAATATGGATTATGACGTGGATTGTATCGATTTCTTTTTG
AATTTCTATATGTGTAATTACTTCGGAACTTGAGCCTGAGTCCATTTTTTTATTATGTGTAATTACTTCGAAACTTGAGT
CTGCTTCTATTTTTCTATTCGAGCCCTTTTTCCTATTCTTTTGTATATAGTTCTTGATACAATTCCGTATTTTTTTATCT
TCCTGTAGACCTTCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32195.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis