Browse Element(s) Details


OsAffx.32196.1.A1_at

Description gb:X15901.1
DB_XREF= gi:11957
GEN=rpl22
TID=OsAffx.32196.1
CNT=1
FEA=DNA_67
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=ribosomal protein L22 (Oryza sativa (japonica cultivar-group)) chloroplast
PROD=ribosomal protein L22
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1677411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g16760OsAffx.32214.1.S1_x_at11/114+9107979..9110484Photosystem I P700 chlorophyll a apoprotein A1, putative, expressed
LOC_Os04g16760Os.26751.1.S1_s_at9/114+9107979..9110484Photosystem I P700 chlorophyll a apoprotein A1, putative, expressed
LOC_Os04g16770Os.46404.1.S1_x_at11/114+9116019..9117080Photosystem Q, putative, expressed
LOC_Os04g16774OsAffx.32196.1.A1_at11/114+9131675..9135405expressed protein
LOC_Os04g16774OsAffx.32199.1.S1_x_at11/114+9131675..9135405expressed protein
LOC_Os04g16774OsAffx.32287.1.A1_at11/114+9131675..9135405expressed protein
LOC_Os04g16774OsAffx.32195.1.A1_at11/114+9131675..9135405expressed protein
LOC_Os04g16774OsAffx.32200.1.A1_x_at11/114+9131675..9135405expressed protein
LOC_Os04g16774OsAffx.32197.1.A1_x_at11/114+9131675..9135405expressed protein
LOC_Os04g16774OsAffx.32233.1.A1_x_at9/114+9131675..9135405expressed protein
LOC_Os04g16774OsAffx.20465.1.A1_x_at6/114+9131675..9135405expressed protein
LOC_Os04g16780OsAffx.32287.1.S1_x_at11/114+9133179..9136938Chloroplast 30S ribosomal protein S3, putative, expressed
LOC_Os04g16780OsAffx.32337.1.S1_x_at11/114+9133179..9136938Chloroplast 30S ribosomal protein S3, putative, expressed
LOC_Os04g16780OsAffx.32196.1.S1_x_at11/114+9133179..9136938Chloroplast 30S ribosomal protein S3, putative, expressed
LOC_Os04g16780Os.46437.1.S1_s_at11/114+9133179..9136938Chloroplast 30S ribosomal protein S3, putative, expressed
LOC_Os04g16780Os.46267.1.S1_x_at11/114+9133179..9136938Chloroplast 30S ribosomal protein S3, putative, expressed
LOC_Os04g16780Os.26688.1.S1_s_at11/114+9133179..9136938Chloroplast 30S ribosomal protein S3, putative, expressed
LOC_Os04g16780OsAffx.32197.1.S1_x_at11/114+9133179..9136938Chloroplast 30S ribosomal protein S3, putative, expressed
LOC_Os04g16780OsAffx.32195.1.S1_x_at9/114+9133179..9136938Chloroplast 30S ribosomal protein S3, putative, expressed
LOC_Os04g16780OsAffx.32199.1.A1_x_at6/114+9133179..9136938Chloroplast 30S ribosomal protein S3, putative, expressed
LOC_Os04g16790OsAffx.32331.1.S1_x_at11/114+9138338..9141153DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os04g16790Os.26455.2.S1_s_at11/114+9138338..9141153DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os04g16790OsAffx.32330.1.A1_at11/114+9138338..9141153DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os04g16790Os.26455.1.S1_at11/114+9138338..9141153DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os04g16790OsAffx.32332.1.S1_x_at11/114+9138338..9141153DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os04g16790OsAffx.32333.1.S1_x_at11/114+9138338..9141153DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os04g16790OsAffx.32334.1.S1_x_at5/114+9138338..9141153DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os04g16800OsAffx.30473.1.S1_x_at11/114+9156196..9158627Photosystem II D2 protein, putative
LOC_Os04g16800OsAffx.30473.2.S1_x_at9/114+9156196..9158627Photosystem II D2 protein, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32196.1.A1_at--116--4076Chr10:10555909..10555933 (25 bp)
CGAGCCCGAGGTCTGAATTTATTCA
NONE
OsAffx.32196.1.A1_at--295--3115Chr10:10555935..10555959 (25 bp)
AATAGTACTCCTACTGACTTCGGCT
NONE
OsAffx.32196.1.A1_at--149--3137Chr10:10555973..10555997 (25 bp)
AATTTGCTTTGTCGAAATCCCTATA
NONE
OsAffx.32196.1.A1_at--236--9116Chr10:10556010..10556034 (25 bp)
TGCTGCTGCCGAATAAACCAACTTT
NONE
OsAffx.32196.1.A1_at--1013--3437Chr10:10556081..10556105 (25 bp)
CAGTTTCTTCGTAGTAACGCCAACG
NONE
OsAffx.32196.1.A1_at--485--9817Chr10:10556095..10556119 (25 bp)
TAACGCCAACGAATCTCATCCAGAA
NONE
OsAffx.32196.1.A1_at--656--576Chr10:10556112..10556137 (25 bp)
ATCCAGAACTCTTTGTACTTTGAAA
NONE
OsAffx.32196.1.A1_at--801--2116Chr10:10556142..10556166 (25 bp)
ACATGTGGATGCGTTTTTGTGCTTT
NONE
OsAffx.32196.1.A1_at--1126--8676Chr10:10556159..10556183 (25 bp)
TGTGCTTTGAAAACCCGTTCGAACT
NONE
OsAffx.32196.1.A1_at--80--1894Chr10:10556191..10556215 (25 bp)
ACGATCGGTTGGTACTTTTCTTGCG
NONE
OsAffx.32196.1.A1_at--329--10376Chr10:10556206..10556230 (25 bp)
TTTTCTTGCGAGTTTCCTTAGCCCA
NONE
Target Sequence 
CGAGCCCGAGGTCTGAATTTATTCATAATAGTACTCCTACTGACTTCGGCTTTAGTGATGAATAAATTTGCTTTGTCGAA
ATCCCTATAATGAGTAGCATTTGCTGCTGCCGAATAAACCAACTTTAAGATGGGATAAGATGCTCGATAAGGCATGAGGT
TCAATATCATAACAGTTTCTTCGTAGTAACGCCAACGAATCTCATCCAGAACTCTTTGTACTTTGAAAACGGACATGTGG
ATGCGTTTTTGTGCTTTGAAAACCCGTTCGAACTTAAGTAGACGATCGGTTGGTACTTTTCTTGCGAGTTTCCTTAGCCC
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32196.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis