Browse Element(s) Details


OsAffx.32337.1.S1_x_at

Description gb:X15901.1
DB_XREF= gi:11957
GEN=rpl16
TID=OsAffx.32337.1
CNT=1
FEA=DNA_65
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=ribosomal protein L16 (Oryza sativa (japonica cultivar-group)) chloroplast
PROD=ribosomal protein L16
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5795011/1150S ribosomal protein L14, putative
LOC_Os04g1678011/11Chloroplast 30S ribosomal protein S3, putative, expressed
LOC_Os12g106103/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g57900Os.32277.1.S1_at11/111+33805833..33808190pentatricopeptide, putative, expressed
LOC_Os01g57910OsAffx.11639.1.S1_at11/111+33808778..33811037YOR3513c, putative
LOC_Os01g57920OsAffx.11640.1.S1_at11/111+33811634..33814672F-box domain containing protein, expressed
LOC_Os01g57930Os.34845.2.S1_x_at11/111+33816133..33819807CDP-alcohol phosphatidyltransferase family protein, expressed
LOC_Os01g57930Os.34845.1.S1_at10/111+33816133..33819807CDP-alcohol phosphatidyltransferase family protein, expressed
LOC_Os01g57940Os.33418.1.S1_at11/111+33821456..33823540Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os01g57940OsAffx.23830.2.S1_at1/111+33821456..33823540Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os01g57944OsAffx.32334.1.S1_x_at11/111+33827640..33830330DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os01g57944Os.26455.2.S1_s_at11/111+33827640..33830330DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os01g57944OsAffx.32335.1.S1_x_at11/111+33827640..33830330DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os01g57944OsAffx.32334.1.S1_s_at11/111+33827640..33830330DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os01g57944OsAffx.32333.1.S1_x_at11/111+33827640..33830330DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os01g57944OsAffx.32331.1.S1_x_at11/111+33827640..33830330DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os01g57944Os.26688.1.S3_s_at10/111+33827640..33830330DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os01g57944OsAffx.32332.1.S1_x_at9/111+33827640..33830330DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os01g57944Os.26455.1.S1_at2/111+33827640..33830330DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os01g57950OsAffx.32337.1.S1_x_at11/111+33830617..3383146050S ribosomal protein L14, putative
LOC_Os01g57950Os.26688.1.S2_s_at10/111+33830617..3383146050S ribosomal protein L14, putative
LOC_Os01g57960OsAffx.2355.1.S1_at1/111+33833519..33835701retrotransposon protein, putative, unclassified, expressed
LOC_Os01g57974OsAffx.32214.1.S1_x_at11/111+33851621..33862024retrotransposon protein, putative, unclassified
LOC_Os01g57974OsAffx.26050.2.S2_x_at11/111+33851621..33862024retrotransposon protein, putative, unclassified
LOC_Os01g57974OsAffx.32225.1.S1_x_at8/111+33851621..33862024retrotransposon protein, putative, unclassified
LOC_Os01g57974OsAffx.32225.1.S1_at8/111+33851621..33862024retrotransposon protein, putative, unclassified
LOC_Os01g57974OsAffx.23039.1.S1_x_at1/111+33851621..33862024retrotransposon protein, putative, unclassified
LOC_Os01g57974OsAffx.2020.1.S1_at1/111+33851621..33862024retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0000311cellular_componentplastid large ribosomal subunit
GO:0000312cellular_componentplastid small ribosomal subunit
GO:0005763cellular_componentmitochondrial small ribosomal subunit
GO:0005840cellular_componentribosome
GO:0009507cellular_componentchloroplast
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32337.1.S1_x_at--872--22513Chr09:14509248..14509272 (25 bp)
AAATCCTACCGAGGCAATTGTATTT
NONE
OsAffx.32337.1.S1_x_at--807--67912Chr09:14509273..14509297 (25 bp)
GTTTTGGTAGATATGCTCTTCAAGC
NONE
OsAffx.32337.1.S1_x_at--542--36511Chr09:14509290..14509314 (25 bp)
CTTCAAGCACTTGAACCCACTTGGA
NONE
OsAffx.32337.1.S1_x_at--1149--25912Chr09:14509303..14509327 (25 bp)
AACCCACTTGGATTACGGCGAGGCA
NONE
OsAffx.32337.1.S1_x_at--1086--14710Chr09:14509346..14509370 (25 bp)
AGCAATGACACGATATGCACGTCGT
NONE
OsAffx.32337.1.S1_x_at--63--4910Chr09:14509380..14509404 (25 bp)
ATCTGGGTACGTATATTTCCCGACA
NONE
OsAffx.32337.1.S1_x_at--452--337Chr09:14509416..14509440 (25 bp)
ATAAGACCGACCGAAACACGTATGG
NONE
OsAffx.32337.1.S1_x_at--228--99710Chr09:14509471..14509495 (25 bp)
TAGCCGTTGTTAAACCAGGTCGAAT
NONE
OsAffx.32337.1.S1_x_at--11--83511Chr09:14509509..14509533 (25 bp)
GGCGGAGTATCCGAAACTGTAGCTA
NONE
OsAffx.32337.1.S1_x_at--740--57712Chr09:14509538..14509558 (21 bp)
GACGAGCTATTTCCATAGCTGCCAG
NONE
OsAffx.32337.1.S1_x_at--267--35712Chr09:14509547..14509571 (25 bp)
CATAGCTGCCAGCAAAATGCCCATA
NONE
Target Sequence 
AAATCCTACCGAGGCAATTGTATTTGTTTTGGTAGATATGCTCTTCAAGCACTTGAACCCACTTGGATTACGGCGAGGCA
GATAGAAGCAGGACGAAGAGCAATGACACGATATGCACGTCGTGGTGGAAAAATCTGGGTACGTATATTTCCCGACAAAC
CGGTTACAATAAGACCGACCGAAACACGTATGGGTTCGGGAAAGGGATCCCCCGAATATTGGGTAGCCGTTGTTAAACCA
GGTCGAATACTTTATGAAATGGGCGGAGTATCCGAAACTGTAGCTAGACGAGCTATTTCCATAGCTGCCAGCAAAATGCC
CATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32337.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis