Browse Element(s) Details


OsAffx.3276.1.S1_at

Description tigr:9631.m01922
TID=OsAffx.3276.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1945210/11expressed protein
LOC_Os10g306203/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g19400OsAffx.3275.1.S1_at11/113+10892628..10895524expressed protein
LOC_Os03g19410Os.9620.1.S1_at11/113+10897165..10904734prolyl oligopeptidase family protein, expressed
LOC_Os03g19410Os.11159.1.S1_at1/113+10897165..10904734prolyl oligopeptidase family protein, expressed
LOC_Os03g19420Os.9311.1.S1_at11/113+10905302..10906769Nicotianamine synthase 2, putative, expressed
LOC_Os03g19436Os.1478.1.S1_at11/113+10908316..10913811Nicotianamine synthase 1, putative, expressed
LOC_Os03g19436OsAffx.25145.1.S1_at7/113+10908316..10913811Nicotianamine synthase 1, putative, expressed
LOC_Os03g19436Os.30136.1.S1_at4/113+10908316..10913811Nicotianamine synthase 1, putative, expressed
LOC_Os03g19452Os.46810.1.S1_at11/113+10917951..10923025expressed protein
LOC_Os03g19452OsAffx.3276.1.S1_at10/113+10917951..10923025expressed protein
LOC_Os03g19452Os.46810.2.S1_x_at1/113+10917951..10923025expressed protein
LOC_Os03g19470OsAffx.12937.1.S1_at11/113+10928353..10930665expressed protein
LOC_Os03g19480Os.21566.1.S1_at10/113+10931168..10938668Polycomb protein EZ3, putative, expressed
LOC_Os03g19480Os.52782.1.S1_at1/113+10931168..10938668Polycomb protein EZ3, putative, expressed
LOC_Os03g19490Os.34204.1.S1_at11/113+10938592..10941213expressed protein
LOC_Os03g19500Os.14794.1.S1_at11/113+10941734..10944621ubiquitinating enzyme, putative, expressed
LOC_Os03g19510Os.8476.1.S1_at11/113+10945631..10948614ATP-dependent Clp protease proteolytic subunit 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3276.1.S1_at--370--5752Chr03:10918552..10918781 (25 bp)
GACGGACCAGGGAACGTCCATGAAT
LOC_Os03g19452
OsAffx.3276.1.S1_at--254--671Chr03:10918776..10918795 (20 bp)
ATGAATGGAGATCTTCGCAGCCGCT
LOC_Os03g19452
OsAffx.3276.1.S1_at--532--6031NONE
GAGATCTTCGCAGCCGCTAAAAGCG
NONE
OsAffx.3276.1.S1_at--1077--4672Chr03:10919678..10919702 (25 bp)
GCGGCAAATCATCAAATTTCCACGG
LOC_Os03g19452
OsAffx.3276.1.S1_at--814--3112Chr03:10919692..10919716 (25 bp)
AATTTCCACGGGACAATGCCCGTCG
LOC_Os03g19452
OsAffx.3276.1.S1_at--981--9891Chr03:10919734..10919758 (25 bp)
TACCCTTCTAGGCAAACCAGGCAAC
LOC_Os03g19452
OsAffx.3276.1.S1_at--440--3271Chr03:10919746..10919770 (25 bp)
CAAACCAGGCAACCAAGAGGCCCGG
LOC_Os03g19452
OsAffx.3276.1.S1_at--613--3571Chr03:10919773..10919797 (25 bp)
CATAGTTTCCCGTCTCTTCTGCTCG
LOC_Os03g19452
OsAffx.3276.1.S1_at--1106--9091Chr03:10919792..10919816 (25 bp)
TGCTCGCAGACGCAGAGATCCGATC
LOC_Os03g19452
OsAffx.3276.1.S1_at--510--1351Chr03:10919805..10919829 (25 bp)
AGAGATCCGATCATACTACCACCAA
LOC_Os03g19452
OsAffx.3276.1.S1_at--40--4051Chr03:10919812..10919836 (25 bp)
CGATCATACTACCACCAAGGCCGAG
LOC_Os03g19452
Target Sequence 
GACGGACCAGGGAACGTCCATGAATGGAGATCTTCGCAGCCGCTAAAAGCGGCAAATCATCAAATTTCCACGGGACAATG
CCCGTCGTCTCCACTGCCAAGTTCTACCCTTCTAGGCAAACCAGGCAACCAAGAGGCCCGGCCCATAGTTTCCCGTCTCT
TCTGCTCGCAGACGCAGAGATCCGATCATACTACCACCAAGGCCGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3276.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis