Browse Element(s) Details


OsAffx.4050.1.S1_at

Description tigr:9632.m03943
TID=OsAffx.4050.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4139011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g41330Os.17244.1.S1_at11/114+24306090..24308564expressed protein
LOC_Os04g41340Os.12371.1.S1_at11/114+24308802..24311410phosphoglycolate/pyridoxal phosphate phosphatase family protein, expressed
LOC_Os04g41340OsAffx.7670.1.S1_at1/114+24308802..24311410phosphoglycolate/pyridoxal phosphate phosphatase family protein, expressed
LOC_Os04g41350OsAffx.14230.1.S1_x_at11/114+24315366..24317159Transmembrane amino acid transporter protein, expressed
LOC_Os04g41350OsAffx.14230.1.S1_at11/114+24315366..24317159Transmembrane amino acid transporter protein, expressed
LOC_Os04g41360OsAffx.26414.1.S1_at10/114+24317407..24318169hypothetical protein
LOC_Os04g41370OsAffx.4049.1.S1_at11/114+24319367..24322495Leucine Rich Repeat family protein
LOC_Os04g41380Os.52747.1.S1_at10/114+24322860..24326268Leucine Rich Repeat family protein, expressed
LOC_Os04g41390OsAffx.4050.1.S1_at11/114+24326702..24327166hypothetical protein
LOC_Os04g41400OsAffx.14231.1.S1_at11/114+24327703..24330018Major Facilitator Superfamily protein, expressed
LOC_Os04g41400OsAffx.14231.1.S1_x_at11/114+24327703..24330018Major Facilitator Superfamily protein, expressed
LOC_Os04g41410Os.27008.1.A1_at9/114+24331451..24334305POT family protein, expressed
LOC_Os04g41430Os.15633.1.S2_at1/114+24338158..24339519retrotransposon protein, putative, LINE subclass
LOC_Os04g41439NANA4+24340639..24340878NA
LOC_Os04g41450Os.52574.1.S1_at11/114+24341892..24347360POT family protein, expressed
LOC_Os04g41450Os.52574.2.S1_x_at10/114+24341892..24347360POT family protein, expressed
LOC_Os04g41450Os.52574.2.S1_at9/114+24341892..24347360POT family protein, expressed
LOC_Os04g41460Os.10117.1.S1_at11/114+24348024..24352489Sugar transporter family protein, expressed
LOC_Os04g41460Os.23978.1.A1_at10/114+24348024..24352489Sugar transporter family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4050.1.S1_at--654--411Chr04:24326738..24326762 (25 bp)
ATCATGGCGCCGATCGCCTCTTGCG
LOC_Os04g41390
OsAffx.4050.1.S1_at--50--8291Chr04:24326771..24326795 (25 bp)
GGCATCAGCAGATGCTACACCGCAG
LOC_Os04g41390
OsAffx.4050.1.S1_at--695--4411Chr04:24326901..24326925 (25 bp)
GCCAGTTTGTGAGGAAGTCCGAGCT
LOC_Os04g41390
OsAffx.4050.1.S1_at--511--4651Chr04:24326970..24326994 (25 bp)
GCGTCTTCCGAGAGCTGCAGCGCAA
LOC_Os04g41390
OsAffx.4050.1.S1_at--69--9031Chr04:24326985..24327009 (25 bp)
TGCAGCGCAAGCTCGGGTTCCGGCA
LOC_Os04g41390
OsAffx.4050.1.S1_at--673--5071Chr04:24327031..24327055 (25 bp)
GCAGCCTGAGCTCGACGTGCTGTAC
LOC_Os04g41390
OsAffx.4050.1.S1_at--510--9371Chr04:24327042..24327066 (25 bp)
TCGACGTGCTGTACCAGCAGGCTGC
LOC_Os04g41390
OsAffx.4050.1.S1_at--507--1531Chr04:24327057..24327081 (25 bp)
AGCAGGCTGCGCTTCCAGGGCAAGC
LOC_Os04g41390
OsAffx.4050.1.S1_at--287--5171Chr04:24327076..24327100 (25 bp)
GCAAGCGGTACAGGAGCCGCATCTA
LOC_Os04g41390
OsAffx.4050.1.S1_at--787--5871Chr04:24327089..24327113 (25 bp)
GAGCCGCATCTATGGCGAGCCCATG
LOC_Os04g41390
OsAffx.4050.1.S1_at--685--3531Chr04:24327110..24327134 (25 bp)
CATGCCCGATTTCGACGACGCCGTG
LOC_Os04g41390
Target Sequence 
ATCATGGCGCCGATCGCCTCTTGCGGCAGCGGCGGCATCAGCAGATGCTACACCGCAGCCACCACCGCCGCGACGATGGC
CAGCGGCGGCGTCCGGCTCCGCAGGAGAGGCTTCGTGCTGTGCGCCGTGGACCACCACGGCGTGAGGCGCGCCGTCGTCG
GCGGCCAGTTTGTGAGGAAGTCCGAGCTGAGGCGGCAGGACGAGCTGCTCGTCTCCCTCCACGAGCTCGTCGGCGTCTTC
CGAGAGCTGCAGCGCAAGCTCGGGTTCCGGCAGTGGGACGAGTTCAGGCGCGCGCAGCCTGAGCTCGACGTGCTGTACCA
GCAGGCTGCGCTTCCAGGGCAAGCGGTACAGGAGCCGCATCTATGGCGAGCCCATGCCCGATTTCGACGACGCCGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4050.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis