Browse Element(s) Details


OsAffx.471.1.S1_at

Description gb:XM_354448.1
DB_XREF= gi:35191502
GEN=P0700D12.15
TID=OsAffx.471.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group).
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4059011/11Oxysterol-binding protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g40550Os.45957.4.S1_x_at11/118+25535896..25540697retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g40560Os.15831.4.S1_x_at11/118+25543843..25549501C2H2 zinc-finger protein, putative, expressed
LOC_Os08g40560Os.15831.3.S1_x_at11/118+25543843..25549501C2H2 zinc-finger protein, putative, expressed
LOC_Os08g40560Os.15831.3.S1_at11/118+25543843..25549501C2H2 zinc-finger protein, putative, expressed
LOC_Os08g40560OsAffx.6874.1.S1_at1/118+25543843..25549501C2H2 zinc-finger protein, putative, expressed
LOC_Os08g40570Os.27275.1.S1_at11/118+25550586..25553679Pyridoxamine 5'-phosphate oxidase family protein, expressed
LOC_Os08g40570Os.27275.2.S1_x_at11/118+25550586..25553679Pyridoxamine 5'-phosphate oxidase family protein, expressed
LOC_Os08g40580Os.6650.1.S1_at11/118+25554795..25557771spermine/spermidine synthase, putative, expressed
LOC_Os08g40590Os.6381.1.S1_at11/118+25562331..25566742Oxysterol-binding protein, expressed
LOC_Os08g40590OsAffx.471.1.S1_at11/118+25562331..25566742Oxysterol-binding protein, expressed
LOC_Os08g40600OsAffx.21993.1.S1_at11/118+25567304..25568780Thaumatin family protein
LOC_Os08g40600OsAffx.21993.2.S1_x_at3/118+25567304..25568780Thaumatin family protein
LOC_Os08g40610Os.6512.1.S1_at11/118+25569799..25571502ribosomal protein S16 containing protein, expressed
LOC_Os08g40620Os.8803.1.S1_at11/118+25579971..25584766RabGAP/TBC domain-containing protein, putative, expressed
LOC_Os08g40630Os.23927.1.S1_at11/118+25586637..25589064mTERF family protein, expressed
LOC_Os08g40640OsAffx.21990.1.S1_at11/118+25590275..25600603retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g40640OsAffx.21991.1.S1_x_at11/118+25590275..25600603retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g40640OsAffx.21991.1.S1_at11/118+25590275..25600603retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g40640OsAffx.21992.1.S1_at11/118+25590275..25600603retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g40640Os.46785.2.S1_x_at5/118+25590275..25600603retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g40640OsAffx.442.1.S1_x_at2/118+25590275..25600603retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g40640OsAffx.442.1.S1_at1/118+25590275..25600603retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g40640OsAffx.30226.2.S1_x_at1/118+25590275..25600603retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0008202biological_processsteroid metabolism
GO:0008142molecular_functionoxysterol binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.471.1.S1_at--923--3911Chr08:25562558..25562582 (25 bp)
CGGCGGCCTTCGATGAGATTCCGAT
LOC_Os08g40590
OsAffx.471.1.S1_at--47--4711Chr08:25562560..25562584 (25 bp)
GCGGCCTTCGATGAGATTCCGATCG
LOC_Os08g40590
OsAffx.471.1.S1_at--8--6311Chr08:25562569..25562593 (25 bp)
GATGAGATTCCGATCGATGGTTCTT
LOC_Os08g40590
OsAffx.471.1.S1_at--1068--8871Chr08:25562571..25562595 (25 bp)
TGAGATTCCGATCGATGGTTCTTTC
LOC_Os08g40590
OsAffx.471.1.S1_at--81--6051Chr08:25562572..25562596 (25 bp)
GAGATTCCGATCGATGGTTCTTTCG
LOC_Os08g40590
OsAffx.471.1.S1_at--180--6591Chr08:25562574..25562598 (25 bp)
GATTCCGATCGATGGTTCTTTCGAC
LOC_Os08g40590
OsAffx.471.1.S1_at--350--10631Chr08:25562576..25562600 (25 bp)
TTCCGATCGATGGTTCTTTCGACGA
LOC_Os08g40590
OsAffx.471.1.S1_at--115--4231Chr08:25562578..25562602 (25 bp)
CCGATCGATGGTTCTTTCGACGACG
LOC_Os08g40590
OsAffx.471.1.S1_at--886--6371Chr08:25562580..25562604 (25 bp)
GATCGATGGTTCTTTCGACGACGGC
LOC_Os08g40590
OsAffx.471.1.S1_at--880--511Chr08:25562581..25562605 (25 bp)
ATCGATGGTTCTTTCGACGACGGCG
LOC_Os08g40590
OsAffx.471.1.S1_at--19--9391Chr08:25562582..25562606 (25 bp)
TCGATGGTTCTTTCGACGACGGCGA
LOC_Os08g40590
Target Sequence 
CGGCGGCCTTCGATGAGATTCCGATCGATGGTTCTTTCGACGACGGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.471.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis