Browse Element(s) Details

OsAffx.4944.1.S1_at

Description

tigr:9634.m02591
TID=OsAffx.4944.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g26170	10/11	hypothetical protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g26130	OsAffx.14839.1.S1_at	1/11	6	+	15288366..15291158	hypothetical protein
LOC_Os06g26130	Os.31845.1.S1_x_at	1/11	6	+	15288366..15291158	hypothetical protein
LOC_Os06g26140	NA	NA	6	+	15293147..15294511	hypothetical protein
LOC_Os06g26150	OsAffx.22699.1.S1_x_at	3/11	6	+	15295175..15301561	retrotransposon protein, putative, unclassified
LOC_Os06g26150	OsAffx.18275.1.S1_x_at	2/11	6	+	15295175..15301561	retrotransposon protein, putative, unclassified
LOC_Os06g26150	OsAffx.13786.1.S1_x_at	1/11	6	+	15295175..15301561	retrotransposon protein, putative, unclassified
LOC_Os06g26160	OsAffx.28610.2.S1_x_at	11/11	6	+	15301894..15304365	hypothetical protein
LOC_Os06g26160	OsAffx.28610.2.S1_at	10/11	6	+	15301894..15304365	hypothetical protein
LOC_Os06g26160	OsAffx.28610.1.S1_at	6/11	6	+	15301894..15304365	hypothetical protein
LOC_Os06g26160	OsAffx.28610.1.S1_x_at	4/11	6	+	15301894..15304365	hypothetical protein
LOC_Os06g26160	OsAffx.28610.3.S1_at	3/11	6	+	15301894..15304365	hypothetical protein
LOC_Os06g26160	Os.4760.1.S1_at	1/11	6	+	15301894..15304365	hypothetical protein
LOC_Os06g26160	OsAffx.28610.4.S1_x_at	1/11	6	+	15301894..15304365	hypothetical protein
LOC_Os06g26170	OsAffx.4944.1.S1_at	10/11	6	+	15310053..15311897	hypothetical protein
LOC_Os06g26180	OsAffx.27828.1.S1_at	11/11	6	+	15313826..15315157	hypothetical protein
LOC_Os06g26180	OsAffx.23345.1.S1_at	2/11	6	+	15313826..15315157	hypothetical protein
LOC_Os06g26180	OsAffx.28650.1.S1_x_at	1/11	6	+	15313826..15315157	hypothetical protein
LOC_Os06g26190	Os.21300.2.S1_at	1/11	6	+	15323219..15325452	hypothetical protein
LOC_Os06g26190	Os.21300.2.S1_x_at	1/11	6	+	15323219..15325452	hypothetical protein
LOC_Os06g26190	OsAffx.27854.1.S1_at	1/11	6	+	15323219..15325452	hypothetical protein
LOC_Os06g26210	OsAffx.15622.1.S1_at	11/11	6	+	15328732..15331084	hypothetical protein
LOC_Os06g26234	OsAffx.15623.1.S1_at	11/11	6	+	15334688..15364532	Alpha amylase, catalytic domain containing protein, expressed
LOC_Os06g26234	Os.27031.1.S1_at	11/11	6	+	15334688..15364532	Alpha amylase, catalytic domain containing protein, expressed
LOC_Os06g26234	OsAffx.28472.1.A1_x_at	10/11	6	+	15334688..15364532	Alpha amylase, catalytic domain containing protein, expressed
LOC_Os06g26234	OsAffx.13933.1.S1_x_at	1/11	6	+	15334688..15364532	Alpha amylase, catalytic domain containing protein, expressed
LOC_Os06g26234	Os.57509.1.A1_at	1/11	6	+	15334688..15364532	Alpha amylase, catalytic domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.4944.1.S1_at--22--465	1	Chr06:15311287..15311750 (25 bp)	GCGTTTGGTGGCTTGAGGAGTTCAT	LOC_Os06g26170
OsAffx.4944.1.S1_at--229--505	1	Chr06:15311766..15311790 (25 bp)	GCAGAAGCTCGGCTTGAGATCCACC	LOC_Os06g26170
OsAffx.4944.1.S1_at--256--269	1	Chr06:15311770..15311794 (25 bp)	AAGCTCGGCTTGAGATCCACCGGAT	LOC_Os06g26170
OsAffx.4944.1.S1_at--114--945	1	Chr06:15311774..15311798 (25 bp)	TCGGCTTGAGATCCACCGGATTGAC	LOC_Os06g26170
OsAffx.4944.1.S1_at--111--603	1	Chr06:15311781..15311805 (25 bp)	GAGATCCACCGGATTGACAGGAACG	LOC_Os06g26170
OsAffx.4944.1.S1_at--369--433	1	Chr06:15311786..15311810 (25 bp)	CCACCGGATTGACAGGAACGGCGAC	LOC_Os06g26170
OsAffx.4944.1.S1_at--838--381	1	Chr06:15311838..15311862 (25 bp)	CTCCAGATCAGCGATGGCGAGGTCC	LOC_Os06g26170
OsAffx.4944.1.S1_at--588--39	3	Chr06:15311844..15311868 (25 bp)	ATCAGCGATGGCGAGGTCCGCGTTC	LOC_Os06g26170
OsAffx.4944.1.S1_at--290--671	1	Chr06:15311865..15311889 (25 bp)	GTTCCCGAACGTCCACTGCATGAAA	LOC_Os06g26170
OsAffx.4944.1.S1_at--770--419	1	Chr06:15311868..15311892 (25 bp)	CCCGAACGTCCACTGCATGAAATCG	LOC_Os06g26170
OsAffx.4944.1.S1_at--605--257	1	Chr06:15311908..15311932 (25 bp)	AACGGAACCTGCACTGAGAGGAGAC	NONE

Target Sequence

GCGTTTGGTGGCTTGAGGAGTTCATGGTGGTGTTTGTGGGGCAGAAGCTCGGCTTGAGATCCACCGGATTGACAGGAACG
GCGACGCGATCCACGGCGGCGCTCCAGGCTTGCTCCAGATCAGCGATGGCGAGGTCCGCGTTCCCGAACGTCCACTGCAT
GAAATCGACTGAACTTAAGGGGAACGGAACCTGCACTGAGAGGAGAC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis