Browse Element(s) Details


OsAffx.5098.1.S1_at

Description tigr:9634.m04252
TID=OsAffx.5098.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4395011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g43910OsAffx.28091.1.S1_at11/116+26449764..26453699myb-like DNA-binding domain, SHAQKYF class family protein
LOC_Os06g43920OsAffx.5097.1.S1_at11/116+26454049..26454964hypothetical protein
LOC_Os06g43930Os.20764.1.S1_s_at11/116+26455293..26460808Serine carboxypeptidase S28 family protein, expressed
LOC_Os06g43930Os.10169.1.S1_at11/116+26455293..26460808Serine carboxypeptidase S28 family protein, expressed
LOC_Os06g43940Os.27468.1.S1_at11/116+26470846..26472966expressed protein
LOC_Os06g43950OsAffx.5098.1.S1_at11/116+26477482..26478274expressed protein
LOC_Os06g43960Os.53651.1.S1_at11/116+26481248..26482813expressed protein
LOC_Os06g43960Os.16254.1.S1_at2/116+26481248..26482813expressed protein
LOC_Os06g43970OsAffx.5099.1.S1_at10/116+26488450..26488888hypothetical protein
LOC_Os06g43980Os.51521.1.S1_at11/116+26490477..26493004expressed protein
LOC_Os06g43980Os.51521.1.S2_at10/116+26490477..26493004expressed protein
LOC_Os06g43980OsAffx.15916.1.S1_at1/116+26490477..26493004expressed protein
LOC_Os06g43990Os.16011.1.A1_at11/116+26495540..26497431expressed protein
LOC_Os06g44000OsAffx.28092.1.S1_at11/116+26499618..26500169hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5098.1.S1_at--240--3571Chr06:26478027..26478208 (25 bp)
CATACTCTCTGTTGGGTGTTCGGAA
LOC_Os06g43950
OsAffx.5098.1.S1_at--532--2911Chr06:26477988..26478012 (25 bp)
AAGGAGGCTGTTTGCTCCGGTGCTT
LOC_Os06g43950
OsAffx.5098.1.S1_at--1140--9091Chr06:26477976..26478000 (25 bp)
TGCTCCGGTGCTTCTCGTGAGCGGT
LOC_Os06g43950
OsAffx.5098.1.S1_at--556--8851Chr06:26477939..26477963 (25 bp)
TGATCTCCGCTTTCTCAGAGCCATT
LOC_Os06g43950
OsAffx.5098.1.S1_at--963--1371Chr06:26477923..26477947 (25 bp)
AGAGCCATTCCTTGATGCTTCGCAT
LOC_Os06g43950
OsAffx.5098.1.S1_at--912--6331Chr06:26477910..26477934 (25 bp)
GATGCTTCGCATGTGGTGCTCCATA
LOC_Os06g43950
OsAffx.5098.1.S1_at--308--4131Chr06:26477903..26477927 (25 bp)
CGCATGTGGTGCTCCATATTGGCAT
LOC_Os06g43950
OsAffx.5098.1.S1_at--966--211Chr06:26477888..26477912 (25 bp)
ATATTGGCATGGAGGCCACCGCTTT
LOC_Os06g43950
OsAffx.5098.1.S1_at--171--3391Chr06:26477861..26477885 (25 bp)
CAGCCGCTGATGTTGAGGTGCCTGT
LOC_Os06g43950
OsAffx.5098.1.S1_at--332--4031Chr06:26477804..26477825 (22 bp)
CGTTGGCTTTCTGCCTCCGGGTGGT
LOC_Os06g43950
OsAffx.5098.1.S1_at--111--9291Chr06:26477531..26477551 (21 bp)
TCCGGGTGGTTCTTGTGCCTAGGAT
LOC_Os06g43950
Target Sequence 
CATACTCTCTGTTGGGTGTTCGGAATGGCGGCGATGAGGAAGGAGGCTGTTTGCTCCGGTGCTTCTCGTGAGCGGTGGTG
GCTGACTTTGATCTCCGCTTTCTCAGAGCCATTCCTTGATGCTTCGCATGTGGTGCTCCATATTGGCATGGAGGCCACCG
CTTTGGCAGCCGCTGATGTTGAGGTGCCTGTGGCAGAAGGGGTGGGGACTGTTGAGGCTGTATCCGCGTTGGCTTTCTGC
CTCCGGGTGGTTCTTGTGCCTAGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5098.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis