Browse Element(s) Details


OsAffx.5828.1.S1_x_at

Description tigr:9630.m05367
TID=OsAffx.5828.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=SAC domain protein 3
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5415011/11SacI homology domain containing protein, expressed
LOC_Os08g155903/11hypothetical protein
LOC_Os10g292743/11expressed protein
LOC_Os07g239301/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g54120Os.14664.1.A1_at10/112+33153795..33163156NOT2/NOT3/NOT5 family protein, expressed
LOC_Os02g54120Os.14664.1.A2_at9/112+33153795..33163156NOT2/NOT3/NOT5 family protein, expressed
LOC_Os02g54120Os.11862.2.S1_at1/112+33153795..33163156NOT2/NOT3/NOT5 family protein, expressed
LOC_Os02g54130Os.38234.1.S1_at11/112+33164064..33169743DnaJ domain containing protein, expressed
LOC_Os02g54130Os.14181.1.S1_at11/112+33164064..33169743DnaJ domain containing protein, expressed
LOC_Os02g54130OsAffx.4222.1.A1_at5/112+33164064..33169743DnaJ domain containing protein, expressed
LOC_Os02g54140Os.51749.1.S1_at11/112+33173620..33174536Hsp20/alpha crystallin family protein, expressed
LOC_Os02g54140Os.49648.1.S1_at11/112+33173620..33174536Hsp20/alpha crystallin family protein, expressed
LOC_Os02g54140Os.49648.1.S1_s_at11/112+33173620..33174536Hsp20/alpha crystallin family protein, expressed
LOC_Os02g54150OsAffx.5828.1.S1_x_at11/112+33186454..33192700SacI homology domain containing protein, expressed
LOC_Os02g54150Os.15534.1.S1_at11/112+33186454..33192700SacI homology domain containing protein, expressed
LOC_Os02g54150Os.46319.1.S1_s_at9/112+33186454..33192700SacI homology domain containing protein, expressed
LOC_Os02g54150Os.52575.1.S1_x_at4/112+33186454..33192700SacI homology domain containing protein, expressed
LOC_Os02g54150Os.26733.2.S1_x_at4/112+33186454..33192700SacI homology domain containing protein, expressed
LOC_Os02g54160Os.2354.1.S1_at11/112+33193938..33196812ethylene response element binding protein, putative, expressed
LOC_Os02g54170Os.51970.1.S1_at11/112+33210608..33213783Leucine Rich Repeat family protein, expressed
LOC_Os02g54170OsAffx.24863.1.S1_x_at11/112+33210608..33213783Leucine Rich Repeat family protein, expressed
LOC_Os02g54180Os.51270.1.S1_at11/112+33214492..33215251expressed protein
LOC_Os02g54190Os.47330.1.S1_at11/112+33215400..33217726Pectinesterase, putative, expressed
LOC_Os02g54190Os.54835.1.S1_s_at1/112+33215400..33217726Pectinesterase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007010biological_processcytoskeleton organization and biogenesis
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0009826biological_processunidimensional cell growth
GO:0009832biological_processcell wall biosynthesis (sensu Magnoliophyta)
GO:0005794cellular_componentGolgi apparatus
GO:0004439molecular_functionphosphoinositide 5-phosphatase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5828.1.S1_x_at--824--10411Chr02:33189862..33189884 (23 bp)
TTATTTCTTGGCTACTTCCAACCAC
LOC_Os02g54150
OsAffx.5828.1.S1_x_at--570--951Chr02:33189889..33189913 (25 bp)
AGGAAAACCTGCACTCTGGGAGCTA
LOC_Os02g54150
OsAffx.5828.1.S1_x_at--567--4851Chr02:33189910..33189934 (25 bp)
GCTAGAGTCATCTTCAGTGGATCAT
LOC_Os02g54150
OsAffx.5828.1.S1_x_at--779--1091Chr02:33189925..33189949 (25 bp)
AGTGGATCATATCGCTGTGCACGCA
LOC_Os02g54150
OsAffx.5828.1.S1_x_at--1124--6651Chr02:33190826..33190850 (25 bp)
GTTGAATGCAGCACCGCTTGATGTT
LOC_Os02g54150
OsAffx.5828.1.S1_x_at--412--7493Chr02:33190855..33190879 (25 bp)
GTGGGTCACAATTTCCAGTGTTGGA
LOC_Os02g54150
OsAffx.5828.1.S1_x_at--707--2091Chr02:33191115..33191139 (25 bp)
ACATCATGTTCCAGGCGGCGTTGAA
LOC_Os02g54150
OsAffx.5828.1.S1_x_at--161--2972Chr02:33191186..33191210 (25 bp)
AATGGCTTTCAACTTCAGGCAACTC
LOC_Os02g54150
OsAffx.5828.1.S1_x_at--1098--1034Chr02:33191894..33191918 (25 bp)
AGGTCCATTGCAATTAGTACTCCAG
LOC_Os02g54150
OsAffx.5828.1.S1_x_at--846--1173Chr02:33191909..33191933 (25 bp)
AGTACTCCAGATGTGAACCTTTCAG
LOC_Os02g54150
OsAffx.5828.1.S1_x_at--514--5211Chr02:33192189..33192213 (25 bp)
GAATTTACCTGAGCATTTCGTGCAG
LOC_Os02g54150
Target Sequence 
TTATTTCTTGGCTACTTCCAACCACAGGAAGGAAAACCTGCACTCTGGGAGCTAGAGTCATCTTCAGTGGATCATATCGC
TGTGCACGCACGTACAATAAAAAGAGTGAGATCAGATGGCAGCATTCTTTATGGAAGCAACACATCCATATCTGGATGTA
GTGGTTGCCATAATGAAGACAAGGAGCTGTTGAATGCAGCACCGCTTGATGTTAAAAGTGGGTCACAATTTCCAGTGTTG
GAATCTGATTCAGTACATGGCAATGAAATTTCATTGACCTGTGAAAGTGAGGTATCAAACTTAAGGTATACACCTATGAT
ACCTCAGACACATCATGTTCCAGGCGGCGTTGAAACTGAAAGTAGCATTCATTCTGGTGATTCAAACTTTCTGGATCTTG
AATGGCTTTCAACTTCAGGCAACTCAAGCGATGAAAGGTCCATTGCAATTAGTACTCCAGATGTGAACCTTTCAGCGGAG
AATGTTATAAGTGGCATAAATTCTGAGACCATGGAAAATCAAGATGCTGATATCTATACTCAGAATTTACCTGAGCATTT
CGTGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5828.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis