Browse Element(s) Details


OsAffx.6997.1.S1_x_at

Description tigr:9639.m00405
TID=OsAffx.6997.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to phosphatidylinositol-4-phosphate 5-kinase-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0490011/11phosphatidylinositol-4-phosphate 5-kinase 4, putative, expressed
LOC_Os11g048401/11Phosphatidylinositol-4-phosphate 5-kinase 4, putative
LOC_Os12g047001/11Phosphatidylinositol-4-phosphate 5-kinase 4, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g04840Os.24619.1.S1_at10/1111+2055584..2059141Phosphatidylinositol-4-phosphate 5-kinase 4, putative
LOC_Os11g04840Os.24619.2.S1_x_at2/1111+2055584..2059141Phosphatidylinositol-4-phosphate 5-kinase 4, putative
LOC_Os11g04840Os.24619.1.S2_at2/1111+2055584..2059141Phosphatidylinositol-4-phosphate 5-kinase 4, putative
LOC_Os11g04840OsAffx.6997.1.S1_x_at1/1111+2055584..2059141Phosphatidylinositol-4-phosphate 5-kinase 4, putative
LOC_Os11g04850NANA11+2061621..2062391DTW domain containing protein
LOC_Os11g04860Os.55208.1.S1_at11/1111+2063724..2065286Indole-3-acetate beta-glucosyltransferase, putative, expressed
LOC_Os11g04870NANA11+2068920..2069681hypothetical protein
LOC_Os11g04880Os.38470.1.S1_at11/1111+2070436..2073045Ubiquitin-like protein 5, putative, expressed
LOC_Os11g04880Os.38470.1.S1_x_at11/1111+2070436..2073045Ubiquitin-like protein 5, putative, expressed
LOC_Os11g04890OsAffx.18676.1.S1_at11/1111+2073422..2075729expressed protein
LOC_Os11g04900Os.51363.1.S1_at11/1111+2082440..2085141phosphatidylinositol-4-phosphate 5-kinase 4, putative, expressed
LOC_Os11g04900OsAffx.6997.1.S1_x_at11/1111+2082440..2085141phosphatidylinositol-4-phosphate 5-kinase 4, putative, expressed
LOC_Os11g04900Os.24619.2.S1_at11/1111+2082440..2085141phosphatidylinositol-4-phosphate 5-kinase 4, putative, expressed
LOC_Os11g04900Os.24619.2.S1_x_at10/1111+2082440..2085141phosphatidylinositol-4-phosphate 5-kinase 4, putative, expressed
LOC_Os11g04910Os.53331.2.S1_x_at9/1111+2086715..2089123expressed protein
LOC_Os11g04920Os.51435.1.S1_at10/1111+2093544..2096748expressed protein
LOC_Os11g04920OsAffx.30820.1.S1_at2/1111+2093544..2096748expressed protein
LOC_Os11g04920OsAffx.27670.1.S1_at1/1111+2093544..2096748expressed protein
LOC_Os11g04930Os.50597.1.S1_at11/1111+2099707..2102938SPRY domain containing protein, expressed
LOC_Os11g04940OsAffx.6998.1.S1_at11/1111+2106545..2107762Lipase family protein
LOC_Os11g04950Os.18447.1.S2_at11/1111+2108141..2114673expressed protein
LOC_Os11g04950Os.18447.1.S1_at10/1111+2108141..2114673expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016308molecular_function1-phosphatidylinositol-4-phosphate 5-kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6997.1.S1_x_at--257--5473Chr12:1991693..1991717 (25 bp)
GAACTGATGCTCAACTTGCAGCTGG
LOC_Os12g04700
OsAffx.6997.1.S1_x_at--715--6271Chr11:2083526..2083767 (25 bp)
GATGTACCTATCATTGCCACCCACT
LOC_Os11g04900
OsAffx.6997.1.S1_x_at--103--1651Chr11:2083451..2083475 (25 bp)
AGCGATTCTCCTTGTCGGCGAGAGG
LOC_Os11g04900
OsAffx.6997.1.S1_x_at--165--5131Chr11:2083336..2083360 (25 bp)
GCAAATCTTGCGGAGGCGATTCACT
LOC_Os11g04900
OsAffx.6997.1.S1_x_at--225--911Chr11:2083323..2083347 (25 bp)
AGGCGATTCACTGCAGCCAGGCGAA
LOC_Os11g04900
OsAffx.6997.1.S1_x_at--811--1411Chr11:2083258..2083282 (25 bp)
AGACAAGCTCCGAGGTCGCCAAGGT
LOC_Os11g04900
OsAffx.6997.1.S1_x_at--289--4211Chr11:2083200..2083224 (25 bp)
CCCCTTTGATGAATCCATGCTGGTG
LOC_Os11g04900
OsAffx.6997.1.S1_x_at--613--9131Chr11:2083183..2083207 (25 bp)
TGCTGGTGCAGCATTCAACAGGCAA
LOC_Os11g04900
OsAffx.6997.1.S1_x_at--652--5251Chr11:2083149..2083173 (25 bp)
GAATCGTGAGGCTGACGTTGCTGCT
LOC_Os11g04900
OsAffx.6997.1.S1_x_at--404--10711Chr11:2083132..2083156 (25 bp)
TTGCTGCTGTTGGTTTGGGTCCAAA
LOC_Os11g04900
OsAffx.6997.1.S1_x_at--149--8611Chr11:2083117..2083141 (25 bp)
TGGGTCCAAAAAACTCAGGCCTCAA
LOC_Os11g04900
Target Sequence 
GAACTGATGCTCAACTTGCAGCTGGGAATAATATTAGATGTACCTATCATTGCCACCCACTTCTCAGCGGAGCGCACAAT
GTCGCTGAGGGGAGGGGGTGAATCCGCCGGCAGCGATTCTCCTTGTCGGCGAGAGGAGGCCAAGAGTAGGACTCCTCGGC
CACAGCCGGGCTCAGCCGGCGAGCGTAGCGCGGCGGCCTCCGCTGAGATGTCGTCGAGGGGAGGGAGCAAATCTTGCGGA
GGCGATTCACTGCAGCCAGGCGAAGCCGGCGAGCATGGTGTGGCGCCCTCCGCCGCCGCCGTGGAGACAAGCTCCGAGGT
CGCCAAGGTCAGGGGCCAGGCGGCCACGCCCTACTCGGCTGCCCCCTTTGATGAATCCATGCTGGTGCAGCATTCAACAG
GCAAGGCGATGGGGAATCGTGAGGCTGACGTTGCTGCTGTTGGTTTGGGTCCAAAAAACTCAGGCCTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6997.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis