Browse Element(s) Details


OsAffx.7770.1.S1_at

Description tigr:9640.m03179
TID=OsAffx.7770.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AF306505 NBS-LRR resistance-like protein J71
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3268011/11NB-ARC domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g32650Os.7337.1.S2_at11/1112+19672493..19679518expressed protein
LOC_Os12g32650Os.7337.1.S3_at11/1112+19672493..19679518expressed protein
LOC_Os12g32650Os.7337.1.S1_at11/1112+19672493..19679518expressed protein
LOC_Os12g32660Os.7337.3.S1_x_at11/1112+19675539..19681634NB-ARC domain containing protein, expressed
LOC_Os12g32660Os.7337.2.S1_at10/1112+19675539..19681634NB-ARC domain containing protein, expressed
LOC_Os12g32660OsAffx.29362.1.S1_x_at1/1112+19675539..19681634NB-ARC domain containing protein, expressed
LOC_Os12g32660OsAffx.29362.1.S1_at1/1112+19675539..19681634NB-ARC domain containing protein, expressed
LOC_Os12g32670Os.53078.1.S1_at11/1112+19687898..19690723NB-ARC domain containing protein, expressed
LOC_Os12g32680OsAffx.7770.1.S1_at11/1112+19701881..19705582NB-ARC domain containing protein
LOC_Os12g32690OsAffx.16381.3.S1_x_at11/1112+19706168..19714591hypothetical protein
LOC_Os12g32690OsAffx.16381.3.S1_at11/1112+19706168..19714591hypothetical protein
LOC_Os12g32690OsAffx.16381.1.S1_x_at8/1112+19706168..19714591hypothetical protein
LOC_Os12g32690OsAffx.16381.2.S1_x_at4/1112+19706168..19714591hypothetical protein
LOC_Os12g32700OsAffx.19938.1.S1_at10/1112+19719294..19720746hypothetical protein
LOC_Os12g32700OsAffx.19938.1.S1_x_at10/1112+19719294..19720746hypothetical protein
LOC_Os12g32710OsAffx.7771.1.S1_x_at11/1112+19725616..19729383NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7770.1.S1_at--893--2512Chr12:19702414..19702438 (25 bp)
AACTTGTTATCCTTGGGTGGTCTTG
LOC_Os12g32680
OsAffx.7770.1.S1_at--80--1611Chr12:19702388..19702412 (25 bp)
AGCTGCTCCATCCTTGAGAGTTCTA
LOC_Os12g32680
OsAffx.7770.1.S1_at--696--6011Chr12:19702373..19702397 (25 bp)
GAGAGTTCTATCAATCCTATGTTGT
LOC_Os12g32680
OsAffx.7770.1.S1_at--986--10591Chr12:19702328..19702352 (25 bp)
TTCTGAACAAGCTGGTTGCTCCTTT
LOC_Os12g32680
OsAffx.7770.1.S1_at--201--7911Chr12:19702315..19702339 (25 bp)
GGTTGCTCCTTTAAGCTGCGTAAGC
LOC_Os12g32680
OsAffx.7770.1.S1_at--925--4771Chr12:19702301..19702325 (25 bp)
GCTGCGTAAGCTCGAAGTTGATCGT
LOC_Os12g32680
OsAffx.7770.1.S1_at--683--7031Chr12:19702238..19702262 (25 bp)
GTACACTATGGAGCTGCACATCGGT
LOC_Os12g32680
OsAffx.7770.1.S1_at--780--8211Chr12:19702091..19702115 (25 bp)
GGAATTACTACAGGGCTTGCATATC
LOC_Os12g32680
OsAffx.7770.1.S1_at--179--4931Chr12:19702077..19702101 (25 bp)
GCTTGCATATCGAAAGAGCCCCTGC
LOC_Os12g32680
OsAffx.7770.1.S1_at--857--2771Chr12:19702064..19702088 (25 bp)
AAGAGCCCCTGCAATTAAGGTCCTC
LOC_Os12g32680
OsAffx.7770.1.S1_at--448--8991Chr12:19701915..19701939 (25 bp)
TGAAGGCCTACTCCGAAGGTGCATT
LOC_Os12g32680
Target Sequence 
AACTTGTTATCCTTGGGTGGTCTTGGAGCTGCTCCATCCTTGAGAGTTCTATCAATCCTATGTTGTGACAAGATCCATCA
TTTATATTCTGAACAAGCTGGTTGCTCCTTTAAGCTGCGTAAGCTCGAAGTTGATCGTGAAGCGATGTTGCTAGTGGAGC
CAATAAGGAGTCTCAAGTACACTATGGAGCTGCACATCGGTGATGATCATGCGATGGAGTCCTTGCCTGAGGAGTGGTTG
CTACAGAATGCTTCTTCGCTCCGTTTGATCGAGATAGGGGTTGCTAAGAATCTGCAGGCCCTACCTGCTCAGATGGAAAA
TTTGGAATTACTACAGGGCTTGCATATCGAAAGAGCCCCTGCAATTAAGGTCCTCCCACAGCTACCAGCTTCACTTAATA
AGCTGACAATCTGGGGCTGTGACCCAAGGTTTCTGGAGCGCTATGAAACTAATGTTGGTTCAGACTGGGTCAAAATCAAA
GACATTGCTCATGTGGATATGAAGGCCTACTCCGAAGGTGCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7770.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis