Browse Element(s) Details


OsAffx.9679.1.S1_at

Description tigr:9629.m07065
TID=OsAffx.9679.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7144011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g71380Os.1385.2.S1_x_at11/111+41692029..41693214Glucan endo-1,3-beta-glucosidase GII precursor, putative, expressed
LOC_Os01g71390OsAffx.16205.1.S1_at2/111+41694593..41695873hypothetical protein
LOC_Os01g71400OsAffx.24006.1.S1_at11/111+41697564..41698743Glucan endo-1,3-beta-glucosidase, acidic isoform precursor, putative
LOC_Os01g71400Os.2416.1.S1_a_at2/111+41697564..41698743Glucan endo-1,3-beta-glucosidase, acidic isoform precursor, putative
LOC_Os01g71400OsAffx.21878.1.S1_x_at2/111+41697564..41698743Glucan endo-1,3-beta-glucosidase, acidic isoform precursor, putative
LOC_Os01g71400OsAffx.21878.2.S1_x_at1/111+41697564..41698743Glucan endo-1,3-beta-glucosidase, acidic isoform precursor, putative
LOC_Os01g71410OsAffx.21887.1.S1_s_at11/111+41702021..41703146Glucan endo-1,3-beta-glucosidase GII precursor, putative, expressed
LOC_Os01g71410Os.1385.2.S1_x_at1/111+41702021..41703146Glucan endo-1,3-beta-glucosidase GII precursor, putative, expressed
LOC_Os01g71420Os.13966.1.S1_at11/111+41711188..41713266calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g71420Os.13966.1.S1_x_at11/111+41711188..41713266calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g71420Os.54192.1.S1_at11/111+41711188..41713266calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g71420Os.54192.1.S1_x_at9/111+41711188..41713266calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g71430OsAffx.21885.3.S1_s_at11/111+41715784..41716923F-box domain containing protein
LOC_Os01g71430OsAffx.21885.3.S1_at11/111+41715784..41716923F-box domain containing protein
LOC_Os01g71440OsAffx.9679.1.S1_at11/111+41717794..41718948F-box domain containing protein
LOC_Os01g71450OsAffx.21885.2.S1_s_at11/111+41720313..41721146F-box domain containing protein
LOC_Os01g71460Os.36487.1.S1_at10/111+41721588..41723052F-box domain containing protein, expressed
LOC_Os01g71474OsAffx.24002.2.S1_s_at11/111+41724663..41728442Lichenase II precursor, putative, expressed
LOC_Os01g71474Os.7551.1.S1_at11/111+41724663..41728442Lichenase II precursor, putative, expressed
LOC_Os01g71474OsAffx.24002.1.S1_at10/111+41724663..41728442Lichenase II precursor, putative, expressed
LOC_Os01g71474OsAffx.22670.1.S1_s_at8/111+41724663..41728442Lichenase II precursor, putative, expressed
LOC_Os01g71474OsAffx.22670.1.S1_x_at1/111+41724663..41728442Lichenase II precursor, putative, expressed
LOC_Os01g71490NANA1+41730319..41731253hypothetical protein
LOC_Os01g71510NANA1+41738343..41741570transposon protein, putative, unclassified
LOC_Os01g71520NANA1+41742186..41748341retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9679.1.S1_at--935--9151Chr01:41718359..41718383 (25 bp)
TGCGCGTGCCGAAACGGATGCAGCA
LOC_Os01g71440
OsAffx.9679.1.S1_at--183--9031Chr01:41718341..41718365 (25 bp)
TGCAGCACAAGTACACGGACATCGT
LOC_Os01g71440
OsAffx.9679.1.S1_at--230--9631Chr01:41718155..41718179 (25 bp)
TCATGGTGAGCAGCTTCGTCGTGGA
LOC_Os01g71440
OsAffx.9679.1.S1_at--917--5371Chr01:41718132..41718156 (25 bp)
GAAGAAGGCTTTGCCGCGCATGGCC
LOC_Os01g71440
OsAffx.9679.1.S1_at--793--4571Chr01:41718117..41718141 (25 bp)
GCGCATGGCCAATGGTACCGGCTAC
LOC_Os01g71440
OsAffx.9679.1.S1_at--999--4911Chr01:41717960..41717984 (25 bp)
GCTTCCACGACGATTTGCGCAACCG
LOC_Os01g71440
OsAffx.9679.1.S1_at--480--871Chr01:41717923..41717947 (25 bp)
ATGGCCGTCCTACGAATCAGGCAAA
LOC_Os01g71440
OsAffx.9679.1.S1_at--629--931Chr01:41717905..41717929 (25 bp)
AGGCAAATACTACTGCTTCCACCCT
LOC_Os01g71440
OsAffx.9679.1.S1_at--680--5751Chr01:41717857..41717881 (25 bp)
GACGCCGGGTTGTACTTACCTGATT
LOC_Os01g71440
OsAffx.9679.1.S1_at--491--9891Chr01:41717845..41717869 (25 bp)
TACTTACCTGATTGTGCCGCATTAC
LOC_Os01g71440
OsAffx.9679.1.S1_at--337--3571Chr01:41717826..41717850 (25 bp)
CATTACGGCGGCTCTTGGTTTGCGC
LOC_Os01g71440
Target Sequence 
TGCGCGTGCCGAAACGGATGCAGCACAAGTACACGGACATCGTGTTCCACCGCGGTGCGTTCTACACTGCCAGCCGCGAC
GGCGAGGTGGCCGCCTGGGCGCCGGACGCGAGCTCCAGCGGCCTGCACGCGGGGCGCGTCTCGGAGCCGACGCAGGAGTG
CACGTGGGCCGCCCTCGTGGAGTCGGTCGGCGGCGACGACCTGCTCATGGTGAGCAGCTTCGTCGTGGAAGAAGGCTTTG
CCGCGCATGGCCAATGGTACCGGCTACCGCGCCGGCGGTACGCGGTGTCGCGCTACGACGGCGAGCGCGAGGGGACGTCG
TCGTGGCTCCCCGTGGAGGATCTCGGCGAGGCTGCCATCTTGGTGGGAAGCAGCTGCAGCTTGTGCGTGTCGACGCGAGG
CTTCCACGACGATTTGCGCAACCGCCTCTTTTTCGCATGGCCGTCCTACGAATCAGGCAAATACTACTGCTTCCACCCTG
ACGAGTATCGCCTGCCGACGGCGACGCCGGGTTGTACTTACCTGATTGTGCCGCATTACGGCGGCTCTTGGTTTGCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9679.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis