Browse Element(s) Details


Os.10315.1.S1_at

Description gb:AK069996.1
DB_XREF= gi:32980020
TID=Os.10315.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10315 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023040B08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023040B08, full insert sequence.
FL= gb:AK069996.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2545410/11UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g25400Os.52081.1.S1_at1/1111+13979657..13984973retrotransposon protein, putative, unclassified
LOC_Os11g25400OsAffx.31867.1.S1_x_at1/1111+13979657..13984973retrotransposon protein, putative, unclassified
LOC_Os11g25400Os.52731.1.S1_at1/1111+13979657..13984973retrotransposon protein, putative, unclassified
LOC_Os11g25400OsAffx.988.1.S1_at1/1111+13979657..13984973retrotransposon protein, putative, unclassified
LOC_Os11g25400OsAffx.23696.1.S1_x_at1/1111+13979657..13984973retrotransposon protein, putative, unclassified
LOC_Os11g25410Os.38395.3.S1_x_at11/1111+13986931..13990188Transposable element protein, putative, MuDR
LOC_Os11g25410Os.38395.2.S1_x_at9/1111+13986931..13990188Transposable element protein, putative, MuDR
LOC_Os11g25410Os.38395.5.S1_at2/1111+13986931..13990188Transposable element protein, putative, MuDR
LOC_Os11g25420OsAffx.13122.3.S1_at10/1111+13992742..13993384hypothetical protein
LOC_Os11g25420OsAffx.22604.1.S1_x_at1/1111+13992742..13993384hypothetical protein
LOC_Os11g25430OsAffx.5008.1.S1_at2/1111+13998208..13999999retrotransposon protein, putative, unclassified
LOC_Os11g25440OsAffx.24114.1.S1_at11/1111+14000917..14001668hypothetical protein
LOC_Os11g25440Os.52448.1.S1_x_at1/1111+14000917..14001668hypothetical protein
LOC_Os11g25454Os.10315.1.S1_at10/1111+14009504..14016057UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os11g25470OsAffx.7199.1.S1_at11/1111+14016650..14017506hypothetical protein
LOC_Os11g25470OsAffx.7199.2.S1_x_at1/1111+14016650..14017506hypothetical protein
LOC_Os11g25480OsAffx.19006.1.S1_at11/1111+14019116..14019521hypothetical protein
LOC_Os11g25490OsAffx.31129.1.S1_at11/1111+14021140..14022240hypothetical protein
LOC_Os11g25490OsAffx.10110.3.S1_s_at1/1111+14021140..14022240hypothetical protein
LOC_Os11g25500Os.24032.2.S1_at10/1111+14022382..14024499transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g25500Os.7207.1.S1_at4/1111+14022382..14024499transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g25510Os.56220.1.S1_at11/1111+14025422..14026945Protein kinase domain containing protein, expressed
LOC_Os11g25510OsAffx.4190.1.S1_x_at2/1111+14025422..14026945Protein kinase domain containing protein, expressed
LOC_Os11g25510OsAffx.26628.1.S1_x_at1/1111+14025422..14026945Protein kinase domain containing protein, expressed
LOC_Os11g25520Os.35344.18.S1_x_at9/1111+14035649..14041544transposon protein, putative, Mutator sub-class
LOC_Os11g25520Os.35344.3.S1_x_at8/1111+14035649..14041544transposon protein, putative, Mutator sub-class
LOC_Os11g25520OsAffx.22940.5.S1_x_at3/1111+14035649..14041544transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10315.1.S1_at--662--10191NONE
TATAGGCGCGTTTTTTGACACACTG
NONE
Os.10315.1.S1_at--503--6011Chr11:14009933..14009957 (25 bp)
GAGAGCATATCCAGGACCGTGCCGA
LOC_Os11g25454
Os.10315.1.S1_at--280--5831Chr11:14009919..14009943 (25 bp)
GACCGTGCCGATGATATGCAAGCCA
LOC_Os11g25454
Os.10315.1.S1_at--683--9011Chr11:14009903..14009927 (25 bp)
TGCAAGCCATGTGGCGGTGACCAGT
LOC_Os11g25454
Os.10315.1.S1_at--590--7511Chr11:14009695..14009719 (25 bp)
GTGGTTCTTCTGATTTAGCCCTACA
LOC_Os11g25454
Os.10315.1.S1_at--1105--9951Chr11:14009680..14009704 (25 bp)
TAGCCCTACAGGACTTGGTTGACTT
LOC_Os11g25454
Os.10315.1.S1_at--1043--7351Chr11:14009613..14009637 (25 bp)
GTGAACATTTTTCTGCGACAATTAT
LOC_Os11g25454
Os.10315.1.S1_at--565--10431Chr11:14009578..14009602 (25 bp)
TTATCGCATTTGGTAATTGGCACAT
LOC_Os11g25454
Os.10315.1.S1_at--1084--5511Chr11:14009553..14009577 (25 bp)
GAAAATGTCTTACACACCACTTGTA
LOC_Os11g25454
Os.10315.1.S1_at--591--1711Chr11:14009539..14009562 (24 bp)
ACCACTTGTATTAAGCTCAGCCCAG
LOC_Os11g25454
Os.10315.1.S1_at--124--4551Chr11:14009518..14009543 (25 bp)
GCCCAGGATTTGGAACCTCATCTAG
LOC_Os11g25454
Target Sequence 
TATAGGCGCGTTTTTTGACACACTGTGGGTGGAACTCGACGCTGGAGAGCATATCCAGGACCGTGCCGATGATATGCAAG
CCATGTGGCGGTGACCAGTTAGGGACGGCGAGGTATGTATGTGACATGNTGGAAGGTGGGTGTTAGGGTTGAGGTCGAGG
ATAAGCTGACCAGAGGGGGAATACAGGCAGCGATTGAGAGGTTGATGGATGGGATAGAGGGTGGAGTAGTTAGAGATAGG
ATGAGAGAGATGGGTGATGTCGTGTCAAAATGCACTACGAAAGGTGGTTCTTCTGATTTAGCCCTACAGGACTTGGTTGA
CTTTATCAAGTCGTCCTAGAAATTATTTCTAGCATTAAAATTTTAGTGAACATTTTTCTGCGACAATTATTCTTATGAAT
TTATCGCATTTGGTAATTGGCACATGAAAATGTCTTACACACCACTTGTATTAAGCTCAGCCCAGGATTTGGAACCTCAT
CTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10315.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis