Browse Element(s) Details


Os.10620.1.S1_at

Description gb:AK119584.1
DB_XREF= gi:37989207
TID=Os.10620.1
CNT=28
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.10620 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023031G07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-117-C06, full insert sequence.
FL= gb:AK069814.1 gb:AK119669.1 gb:AK119584.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0794011/11lactoylglutathione lyase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g07910OsAffx.14587.1.S1_at11/115+4261865..4262939hypothetical protein
LOC_Os05g07920Os.41695.15.S1_s_at11/115+4265754..4272796transposon protein, putative, Mutator sub-class
LOC_Os05g07920Os.41695.5.S1_x_at7/115+4265754..4272796transposon protein, putative, Mutator sub-class
LOC_Os05g07920Os.41695.3.S1_x_at6/115+4265754..4272796transposon protein, putative, Mutator sub-class
LOC_Os05g07920Os.41695.2.S1_x_at5/115+4265754..4272796transposon protein, putative, Mutator sub-class
LOC_Os05g07920Os.41695.4.S1_x_at1/115+4265754..4272796transposon protein, putative, Mutator sub-class
LOC_Os05g07930OsAffx.29502.1.S1_at10/115+4274310..4277005GRF zinc finger family protein
LOC_Os05g07930OsAffx.29502.2.S1_at5/115+4274310..4277005GRF zinc finger family protein
LOC_Os05g07930OsAffx.29502.2.S1_x_at4/115+4274310..4277005GRF zinc finger family protein
LOC_Os05g07940Os.19587.1.S1_at11/115+4279452..4284082lactoylglutathione lyase family protein, putative, expressed
LOC_Os05g07940Os.10620.1.S1_at11/115+4279452..4284082lactoylglutathione lyase family protein, putative, expressed
LOC_Os05g07940Os.19587.1.S2_at10/115+4279452..4284082lactoylglutathione lyase family protein, putative, expressed
LOC_Os05g07950OsAffx.26781.2.S1_at10/115+4287115..4288441F-box domain containing protein, expressed
LOC_Os05g07960Os.26779.1.S1_at11/115+4290554..4292377F-box protein interaction domain containing protein, expressed
LOC_Os05g07960OsAffx.26779.1.S1_x_at1/115+4290554..4292377F-box protein interaction domain containing protein, expressed
LOC_Os05g07970Os.14919.1.S1_at1/115+4293296..4294795hypothetical protein
LOC_Os05g07980OsAffx.26779.1.S1_x_at9/115+4296238..4299886expressed protein
LOC_Os05g07980OsAffx.26779.1.S1_at7/115+4296238..4299886expressed protein
LOC_Os05g07980Os.51733.1.S1_x_at7/115+4296238..4299886expressed protein
LOC_Os05g07980Os.50315.2.A1_at1/115+4296238..4299886expressed protein
LOC_Os05g07990OsAffx.26780.1.S1_at9/115+4300724..4301864hypothetical protein
LOC_Os05g08000OsAffx.26781.1.S1_at11/115+4303863..4305161hypothetical protein
LOC_Os05g08010Os.7402.1.S1_at11/115+4307738..4309362F-box domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005975biological_processcarbohydrate metabolism
GO:0008152biological_processmetabolism
GO:0003824molecular_functioncatalytic activity
GO:0004462molecular_functionlactoylglutathione lyase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10620.1.S1_at--422--2111Chr05:4283612..4283636 (25 bp)
ACATGCTTGTGTGGCTGCAATGCAA
LOC_Os05g07940
Os.10620.1.S1_at--466--6931Chr05:4283649..4283673 (25 bp)
GTAGGCTGATGTACAAACTCACCAA
LOC_Os05g07940
Os.10620.1.S1_at--216--10091Chr05:4283676..4283700 (25 bp)
TAGGTTATTTACTACTCCCTTCTCT
LOC_Os05g07940
Os.10620.1.S1_at--330--6271Chr05:4283725..4283749 (25 bp)
GATGTGACACACCTTCATACTACGA
LOC_Os05g07940
Os.10620.1.S1_at--367--7671Chr05:4283846..4283870 (25 bp)
GGGTTGGTCCACTTAAATAGCATGT
LOC_Os05g07940
Os.10620.1.S1_at--575--10091Chr05:4283870..4283894 (25 bp)
TATGTGGGTTAGTGGTCAGCTCTCT
LOC_Os05g07940
Os.10620.1.S1_at--989--4811Chr05:4283888..4283912 (25 bp)
GCTCTCTTTCATCGCTAAATGCAAT
LOC_Os05g07940
Os.10620.1.S1_at--450--1931Chr05:4283915..4283939 (25 bp)
ACGGTTGTGGTTTGCTAGATCAGTT
LOC_Os05g07940
Os.10620.1.S1_at--746--7111Chr05:4283940..4283964 (25 bp)
GTCAGGTTATGCGATTGGGCTCACT
LOC_Os05g07940
Os.10620.1.S1_at--492--7571Chr05:4283956..4283980 (25 bp)
GGGCTCACTGGGAGTTTGTACATGA
LOC_Os05g07940
Os.10620.1.S1_at--499--7611Chr05:4283994..4284018 (25 bp)
GGGCAATGTAATCCCCTTTGTTATA
LOC_Os05g07940
Target Sequence 
ACATGCTTGTGTGGCTGCAATGCAATTAGGGATGCAAGTAGGCTGATGTACAAACTCACCAAAATAGGTTATTTACTACT
CCCTTCTCTCGTAAAAAAACCAATCTAGGATCGGATGTGACACACCTTCATACTACGAATCTAGACATATATATGTCCAG
ATTCACAGTACTATAATATGTCATATCTGATTCTAGGTTTGTTTTTTATAGCAAGGATGGAGTACGTGGTTGGTGGGTTG
GTCCACTTAAATAGCATGTATGTGGGTTAGTGGTCAGCTCTCTTTCATCGCTAAATGCAATGAACGGTTGTGGTTTGCTA
GATCAGTTGTCAGGTTATGCGATTGGGCTCACTGGGAGTTTGTACATGAGTACTATGGTGTTGGGCAATGTAATCCCCTT
TGTTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10620.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis