Browse Element(s) Details


Os.10756.1.S1_at

Description gb:AK073611.1
DB_XREF= gi:32983634
TID=Os.10756.1
CNT=57
FEA=FLmRNA
TIER=FL+Stack
STK=23
UG=Os.10756 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-044-E09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033048H19, full insert sequence.
FL= gb:AK099342.1 gb:AK104877.1 gb:AK073611.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1445011/11Enolase 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g14380Os.14251.1.S1_a_at11/113+7798951..7806368Autophagy protein Apg9 containing protein, expressed
LOC_Os03g14380Os.14251.1.S2_at11/113+7798951..7806368Autophagy protein Apg9 containing protein, expressed
LOC_Os03g14380Os.14251.2.S1_x_at11/113+7798951..7806368Autophagy protein Apg9 containing protein, expressed
LOC_Os03g14380Os.14251.1.S1_at11/113+7798951..7806368Autophagy protein Apg9 containing protein, expressed
LOC_Os03g14390OsAffx.12858.1.S1_at11/113+7807082..7808351hypothetical protein
LOC_Os03g14400Os.8110.1.S1_at10/113+7810937..7812796Cytochrome P450 family protein, expressed
LOC_Os03g14410Os.52789.1.S1_at1/113+7813588..7817890retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g14420Os.15637.1.S1_s_at11/113+7819865..7822224Cytochrome P450 family protein, expressed
LOC_Os03g14430OsAffx.12859.1.S1_at11/113+7822702..7823350hypothetical protein
LOC_Os03g14440OsAffx.3241.1.S1_at11/113+7823964..7824437hypothetical protein
LOC_Os03g14450Os.10756.1.S1_at11/113+7827049..7831767Enolase 2, putative, expressed
LOC_Os03g14450Os.57462.1.S1_x_at1/113+7827049..7831767Enolase 2, putative, expressed
LOC_Os03g14450Os.2232.3.S1_x_at1/113+7827049..7831767Enolase 2, putative, expressed
LOC_Os03g14460Os.26886.3.S1_x_at3/113+7838291..7839168transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g14470Os.26886.1.S1_x_at9/113+7839813..7841638transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g14470OsAffx.16244.1.S1_x_at1/113+7839813..7841638transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g14480OsAffx.26148.1.S1_at6/113+7842593..7843831hypothetical protein
LOC_Os03g14480OsAffx.26148.1.S1_x_at5/113+7842593..7843831hypothetical protein
LOC_Os03g14490Os.26886.2.S1_s_at6/113+7844355..7847390transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g14490Os.26886.6.S1_s_at5/113+7844355..7847390transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g14490OsAffx.16467.1.S1_at4/113+7844355..7847390transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g14490Os.20521.1.S2_at1/113+7844355..7847390transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g14500Os.54824.1.S1_at11/113+7850547..7852429expressed protein
LOC_Os03g14510Os.52924.1.S1_at11/113+7853590..7857478Immature colon carcinoma transcript 1 protein precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009409biological_processresponse to cold
GO:0009416biological_processresponse to light stimulus
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0004634molecular_functionphosphopyruvate hydratase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10756.1.S1_at--208--1791Chr03:7828079..7828190 (25 bp)
ACCCAACTAGGGTAGCCAAGGCAAT
LOC_Os03g14450
Os.10756.1.S1_at--518--3851Chr03:7828043..7828066 (24 bp)
CTGCAATGCTCTTCTCCTTAAGGTT
LOC_Os03g14450
Os.10756.1.S1_at--913--6471Chr03:7827738..7827762 (25 bp)
GATACATTCATTGCTGATCTGGCAG
LOC_Os03g14450
Os.10756.1.S1_at--1032--1211Chr03:7827583..7827739 (25 bp)
AGTTGGTTTATCCACGGGCCAGATC
LOC_Os03g14450
Os.10756.1.S1_at--721--6451Chr03:7827562..7827586 (25 bp)
GATCAAGACTGGAGCTCCTTGCAGA
LOC_Os03g14450
Os.10756.1.S1_at--136--1291Chr03:7827540..7827564 (25 bp)
AGATCTGAGCGCCTTGCCAAGTACA
LOC_Os03g14450
Os.10756.1.S1_at--1113--5851Chr03:7827259..7827283 (25 bp)
GAGCCAAATTCCGTGCACCAGTGGA
LOC_Os03g14450
Os.10756.1.S1_at--623--9031Chr03:7827246..7827270 (25 bp)
TGCACCAGTGGAGCCCTACTAGATG
LOC_Os03g14450
Os.10756.1.S1_at--1084--7851Chr03:7827176..7827200 (25 bp)
GGTTTGAGCAATAATTCCCCACGGT
LOC_Os03g14450
Os.10756.1.S1_at--726--7111Chr03:7827153..7827177 (25 bp)
GTCAGATGTGGGTGGACATGCTCCC
LOC_Os03g14450
Os.10756.1.S1_at--29--3671Chr03:7827120..7827144 (25 bp)
CTTAATTTTGATGTTGCGTGGCGCA
LOC_Os03g14450
Target Sequence 
ACCCAACTAGGGTAGCCAAGGCAATTAAGGACAAGGCCTGCAATGCTCTTCTCCTTAAGGTTAACCAAATTGGATCTGTT
ACTGAGAGCATTGAGGCTGTCAAGATGTCAAAACGTGCTGGCTGGGGTGTGATGACCAGTCACAGGAGTGGTGAAACTGA
GGATACATTCATTGCTGATCTGGCAGTTGGTTTATCCACGGGCCAGATCAAGACTGGAGCTCCTTGCAGATCTGAGCGCC
TTGCCAAGTACAACCAGCTTCTTAGGATCGAGGAGGAGCTTGGTGCTGCTGCCGTCTATGCCGGAGCCAAATTCCGTGCA
CCAGTGGAGCCCTACTAGATGGGAATAGAACCACTTCGTTTCCGTAAATTTTGTGAAGATNNTGNNNNNNNNNTGNNNNN
AGGGTTTGAGCAATAATTCCCCACGGTCAGATGTGGGTGGACATGCTCCCACAAAACGCTTAATTTTGATGTTGCGTGGC
GCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10756.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis