Browse Element(s) Details


Os.11549.1.S1_at

Description gb:BU673475
DB_XREF= gi:23514116
DB_XREF=NL_15_88
CLONE=NL_15_88
TID=Os.11549.1
CNT=11
FEA=FLmRNA
TIER=Stack
STK=6
UG=Os.11549 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023019E08, full insert sequence
FL= gb:AK069456.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0208011/11Peroxidase 52 precursor, putative, expressed
LOC_Os11g021302/11Peroxidase 52 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g02020Os.51497.1.A1_s_at11/1112+598639..601697expressed protein
LOC_Os12g02020OsAffx.7458.1.S1_x_at10/1112+598639..601697expressed protein
LOC_Os12g02020Os.18660.1.S1_x_at1/1112+598639..601697expressed protein
LOC_Os12g02030Os.8562.1.S1_a_at11/1112+601666..603502BTB/POZ domain containing protein, expressed
LOC_Os12g02030Os.8562.2.S1_x_at10/1112+601666..603502BTB/POZ domain containing protein, expressed
LOC_Os12g02030Os.8562.1.S1_x_at4/1112+601666..603502BTB/POZ domain containing protein, expressed
LOC_Os12g02040Os.46087.1.S1_at9/1112+605574..607215Hypoxia induced protein conserved region containing protein, expressed
LOC_Os12g02040Os.12584.1.S1_x_at9/1112+605574..607215Hypoxia induced protein conserved region containing protein, expressed
LOC_Os12g02040Os.2331.1.S1_x_at7/1112+605574..607215Hypoxia induced protein conserved region containing protein, expressed
LOC_Os12g02040Os.2331.1.S1_at3/1112+605574..607215Hypoxia induced protein conserved region containing protein, expressed
LOC_Os12g02050OsAffx.18633.1.S1_at11/1112+609165..611432expressed protein
LOC_Os12g02050OsAffx.18633.1.S1_s_at11/1112+609165..611432expressed protein
LOC_Os12g02050OsAffx.18633.2.S1_at1/1112+609165..611432expressed protein
LOC_Os12g02060Os.55595.1.S1_at5/1112+613316..614845Cationic peroxidase 1 precursor, putative, expressed
LOC_Os12g02070Os.50351.1.S1_s_at3/1112+615651..616635expressed protein
LOC_Os12g02070Os.50351.1.S1_at1/1112+615651..616635expressed protein
LOC_Os12g02080Os.11549.1.S1_at11/1112+622582..625113Peroxidase 52 precursor, putative, expressed
LOC_Os12g02090OsAffx.31549.2.S1_x_at3/1112+626213..626638TCP family transcription factor containing protein
LOC_Os12g02090OsAffx.31549.1.S1_x_at2/1112+626213..626638TCP family transcription factor containing protein
LOC_Os12g02100Os.39076.1.A1_s_at11/1112+631454..637030expressed protein
LOC_Os12g02100Os.52675.1.S1_at11/1112+631454..637030expressed protein
LOC_Os12g02110OsAffx.19452.1.S1_x_at11/1112+637470..638114hypothetical protein
LOC_Os12g02120Os.5998.1.S1_at10/1112+638746..642600Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os12g02130Os.35188.1.S1_at10/1112+644370..650343expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11549.1.S1_at--953--9271Chr12:624509..624530 (22 bp)
TCCGGATCTCACACCATTGGGCAAG
LOC_Os12g02080
Os.11549.1.S1_at--200--2652Chr12:624568..624592 (25 bp)
AACCAACATCGACAGTGGCTTTGCG
LOC_Os12g02080
Os.11549.1.S1_at--150--6691Chr12:624609..624633 (25 bp)
GTTGCCCTCGTAACTCAGGATCAGG
LOC_Os12g02080
Os.11549.1.S1_at--137--8971Chr12:624634..624658 (25 bp)
TGACAATAACCTGGCACCTCTGGAT
LOC_Os12g02080
Os.11549.1.S1_at--1050--10512Chr12:624660..624684 (25 bp)
TTCAGACGCCAACCGTGTTCGAGAA
LOC_Os12g02080
Os.11549.1.S1_at--1132--6331Chr12:624761..624785 (25 bp)
GATGCTCTTGTTCAGTCTTACATAA
LOC_Os12g02080
Os.11549.1.S1_at--919--4411Chr12:624789..624813 (25 bp)
GCCAGAGCACATTCTTTGCGGATTT
LOC_Os12g02080
Os.11549.1.S1_at--642--2791Chr12:624911..624935 (25 bp)
AAGAGGCAAGCTGTGTTCATGTCCA
LOC_Os12g02080
Os.11549.1.S1_at--246--3611Chr12:624950..624974 (25 bp)
CATTGTGTCGTGTTTCTTGCGGATA
LOC_Os12g02080
Os.11549.1.S1_at--252--7951Chr12:624970..624994 (25 bp)
GGATATGTTTGCAACATCTCCCTTA
LOC_Os12g02080
Os.11549.1.S1_at--26--472Chr12:624985..625009 (25 bp)
ATCTCCCTTAATTTCTTTCATGTGT
LOC_Os12g02080
Target Sequence 
TCCGGATCTCACACCATTGGGCAAGCACGATGCACAAACTTCAGAGCTCATATATACAACGAAACCAACATCGACAGTGG
CTTTGCGATGAGGAGGCAATCAGGTTGCCCTCGTAACTCAGGATCAGGTGACAATAACCTGGCACCTCTGGATCTTCAGA
CGCCAACCGTGTTCGAGAACAACTACTACAAGAACCTCGTCGTCAAGAAGGGGCTCCTGCATTCTGATCAGGAGCTCTTC
AATGGCGGAGCCACTGATGCTCTTGTTCAGTCTTACATAAGTAGCCAGAGCACATTCTTTGCGGATTTTGTGACGGGCAT
GATCAAGATGGGGGACATCACACCGTTGACGGGATCAAACGGGGAGATCAGGAAGAACTGCAGAAGGATTAATTAAGAAA
TGATTAAGAGGCAAGCTGTGTTCATGTCCAGTAGTGCAAACGCACATTGTGTCGTGTTTCTTGCGGATATGTTTGCAACA
TCTCCCTTAATTTCTTTCATGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11549.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis