Browse Element(s) Details


Os.11575.3.S1_x_at

Description gb:AK065363.1
DB_XREF= gi:32975381
TID=Os.11575.3
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11575 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0026J14.30 (OSJNBa0026J14.30), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013003I09, full insert sequence.
FL= gb:AK065363.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4644011/11BTB/POZ domain containing protein, expressed
LOC_Os08g404809/11transposon protein, putative, Pong sub-class, expressed
LOC_Os07g107508/11transposon protein, putative, Pong sub-class
LOC_Os01g085008/11transposon protein, putative, Pong sub-class
LOC_Os05g327408/11transposon protein, putative, Pong sub-class
LOC_Os01g367108/11transposon protein, putative, Pong sub-class
LOC_Os09g085108/11transposon protein, putative, Pong sub-class
LOC_Os09g146502/11transposon protein, putative, Pong sub-class
LOC_Os02g265001/11transposon protein, putative, Pong sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g46390Os.14113.1.S1_at11/113+26188352..26194787Ras-related protein RHN1, putative, expressed
LOC_Os03g46400Os.52098.1.A1_at10/113+26191875..26193585UDP-glucose: chalcononaringenin 2'-O-glucosyltransferase, putative, expressed
LOC_Os03g46410Os.7022.1.S1_at11/113+26194914..26198428expressed protein
LOC_Os03g46420Os.52340.1.S1_at11/113+26200692..26201799expressed protein
LOC_Os03g46424NANA3+26205738..26205986hypothetical protein
LOC_Os03g46430OsAffx.20858.5.S1_x_at11/113+26210649..26213430hypothetical protein
LOC_Os03g46430OsAffx.20858.1.S1_x_at5/113+26210649..26213430hypothetical protein
LOC_Os03g46430OsAffx.20858.4.S1_x_at3/113+26210649..26213430hypothetical protein
LOC_Os03g46440Os.11575.2.S1_a_at11/113+26213876..26221395BTB/POZ domain containing protein, expressed
LOC_Os03g46440Os.11575.4.S1_x_at11/113+26213876..26221395BTB/POZ domain containing protein, expressed
LOC_Os03g46440Os.11575.1.S1_at11/113+26213876..26221395BTB/POZ domain containing protein, expressed
LOC_Os03g46440Os.11575.3.S1_x_at11/113+26213876..26221395BTB/POZ domain containing protein, expressed
LOC_Os03g46440Os.11575.1.S1_a_at11/113+26213876..26221395BTB/POZ domain containing protein, expressed
LOC_Os03g46450OsAffx.30226.2.S1_s_at10/113+26226216..26230184retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g46450OsAffx.442.1.S1_x_at7/113+26226216..26230184retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g46450OsAffx.30226.1.S1_x_at5/113+26226216..26230184retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g46450OsAffx.30226.2.S1_x_at4/113+26226216..26230184retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g46450OsAffx.30226.1.S1_at2/113+26226216..26230184retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g46450OsAffx.19052.1.S1_at1/113+26226216..26230184retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g46450OsAffx.442.1.S1_at1/113+26226216..26230184retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g46454OsAffx.10755.1.S1_at11/113+26230441..26231345ZIP zinc/iron transport family protein, expressed
LOC_Os03g46460Os.16517.1.S1_at11/113+26232282..26236343membrane associated salt-inducible protein, putative, expressed
LOC_Os03g46470Os.19632.1.S1_at11/113+26235422..26241186ZIP zinc/iron transport family protein, expressed
LOC_Os03g46480Os.26875.1.S1_at9/113+26242375..26247663RanBP1 domain containing protein, expressed
LOC_Os03g46480OsAffx.5832.1.S1_at1/113+26242375..26247663RanBP1 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008219biological_processcell death
GO:0009408biological_processresponse to heat
GO:0009617biological_processresponse to bacteria
GO:0009618biological_processresponse to pathogenic bacteria
GO:0009621biological_processresponse to pathogenic fungi
GO:0009625biological_processresponse to insect
GO:0009627biological_processsystemic acquired resistance
GO:0009862biological_processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0009954biological_processproximal/distal pattern formation
GO:0010227biological_processfloral organ abscission
GO:0048439biological_processflower morphogenesis
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11575.3.S1_x_at--874--49510Chr09:8684538..8684562 (25 bp)
GCATATATCCTTCTTGGGCCACATT
LOC_Os09g14650
Os.11575.3.S1_x_at--18--8459Chr09:8684554..8684578 (25 bp)
GGCCACATTTGTGAAGACCATACCA
LOC_Os09g14650
Os.11575.3.S1_x_at--797--9376Chr07:5834611..5834635 (25 bp)
TCGAGGGCCAGCTCGACATTGGGAT
LOC_Os07g10750
Os.11575.3.S1_x_at--1139--2337Chr07:5834638..5834662 (25 bp)
AAAGACTCTGGGATACATCATGAAA
LOC_Os07g10750
Os.11575.3.S1_x_at--252--1438Chr09:8684809..8684833 (25 bp)
AGAAAATGTCAGAGTGTCCCACGAT
NONE
Os.11575.3.S1_x_at--843--6118Chr07:5834751..5834775 (25 bp)
GAGTGTCCCACGATGAAATACCTGA
LOC_Os07g10750
Os.11575.3.S1_x_at--672--8117Chr07:5834812..5834836 (25 bp)
GGACGACGAAACTCACTATCAGCTA
LOC_Os07g10750
Os.11575.3.S1_x_at--92--9938Chr07:5834835..5834859 (25 bp)
TACGTGAAGACCTAGTGGAGCACTT
LOC_Os07g10750
Os.11575.3.S1_x_at--554--5114Chr08:25475077..25475096 (20 bp)
GCACTTGTGGCAACATTATCCGGAT
LOC_Os08g40480
Os.11575.3.S1_x_at--85--252Chr03:26213948..26213972 (25 bp)
ATATACATATGTGAGGATTTGCCAA
LOC_Os03g46440
Os.11575.3.S1_x_at--31--5238Chr07:5834977..5835001 (25 bp)
GAATAAATGGTGTACTGTTCGGTTT
NONE
Target Sequence 
GCATATATCCTTCTTGGGCCACATTTGTGAAGACCATACCANAACCACATGGCAACAAGAGGAAATATTTTGNCAAAGCA
CAGGAAGCAGTAAGGAAGGANGTCGAACGAGCTTTTGGGGNTTCTGCAAGCTCGANTTGNCATTGNTCGAGGGCCAGCTC
GACATTGGGATGAAAAGACTCTGGGATACATCATGAAAGCTTGTGTTATCATGCATAACATGATTATTGAAGATGAGGGA
GAAGTTGATTGGGAAGAACGGTTCCCAGAGGGAGGAGAAAATGTCAGAGTGTCCCACGATGAAATACCTGATCTTGATGA
TTTTATCCAAATGCACAAAAAAATAAGGGACGACGAAACTCACTATCAGCTACGTGAAGACCTAGTGGAGCACTTGTGGC
AACATTATCCGGATAAATATTGAGGTTTTATTTATATGTTTGAATTCCATGTAATAAATAATATACATATGTGAGGATTT
GCCAAATCATCTTAATTTGTTTTTCATGAATTGAATAAATGGTGTACTGTTCGGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11575.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis