Browse Element(s) Details


Os.11602.1.S1_at

Description gb:AK099586.1
DB_XREF= gi:32984795
TID=Os.11602.1
CNT=30
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11602 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 30844 unknown mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013042N12, full insert sequence.
FL= gb:AK099586.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3809011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g38030Os.10118.1.S1_at11/119+21916843..21921942UTP-glucose-1-phosphate uridylyltransferase, putative, expressed
LOC_Os09g38040Os.22915.1.S1_at11/119+21922408..21925576Nudix hydrolase 23, chloroplast precursor, putative, expressed
LOC_Os09g38050NANA9+21928150..21928746hypothetical protein
LOC_Os09g38060Os.12226.1.S1_at11/119+21930534..21934430nicotinate-nucleotide pyrophosphorylase family protein, expressed
LOC_Os09g38060Os.17740.1.S1_x_at1/119+21930534..21934430nicotinate-nucleotide pyrophosphorylase family protein, expressed
LOC_Os09g38070Os.19310.1.S1_at11/119+21936500..21938069expressed protein
LOC_Os09g38080Os.48912.1.S1_at11/119+21941524..21944947retrotransposon protein, putative, unclassified, expressed
LOC_Os09g38080Os.47130.4.A1_x_at3/119+21941524..21944947retrotransposon protein, putative, unclassified, expressed
LOC_Os09g38090Os.11602.1.S1_at11/119+21945461..21948530expressed protein
LOC_Os09g38100OsAffx.18042.1.S1_at11/119+21948982..21951711Mitochondrial carrier protein
LOC_Os09g38104OsAffx.30186.1.S1_at7/119+21954094..21954398hypothetical protein
LOC_Os09g38110Os.55583.1.S1_x_at11/119+21955911..21956856Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g38110Os.55583.1.S1_at11/119+21955911..21956856Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g38120OsAffx.18043.1.S1_at11/119+21960461..21960891hypothetical protein
LOC_Os09g38130Os.19608.1.S1_at11/119+21963065..21967738Auxin Efflux Carrier family protein, expressed
LOC_Os09g38130Os.47814.1.A1_s_at11/119+21963065..21967738Auxin Efflux Carrier family protein, expressed
LOC_Os09g38139NANA9+21968377..21968969NA
LOC_Os09g38150OsAffx.18044.1.S1_at11/119+21972126..21973764expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009902biological_processchloroplast relocation
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11602.1.S1_at--9--10511Chr09:21947942..21947966 (25 bp)
TTCAAGGTGGCGAACATGCACGTCG
LOC_Os09g38090
Os.11602.1.S1_at--896--2271Chr09:21948104..21948128 (25 bp)
AAATCCGGCCATGACGTGCTCTGGA
LOC_Os09g38090
Os.11602.1.S1_at--733--2111Chr09:21948153..21948177 (25 bp)
ACATGTGGCTCAAGCCGTTGCGCAA
LOC_Os09g38090
Os.11602.1.S1_at--1064--6651Chr09:21948169..21948193 (25 bp)
GTTGCGCAACCCTGACGTGAAGATC
LOC_Os09g38090
Os.11602.1.S1_at--136--6391Chr09:21948190..21948214 (25 bp)
GATCCCTCTCAAGTAGATGCTGCAT
LOC_Os09g38090
Os.11602.1.S1_at--1142--3771Chr09:21948221..21948245 (25 bp)
CTCTGTGCTTCTCTGATGCTGAAAA
LOC_Os09g38090
Os.11602.1.S1_at--348--10671Chr09:21948323..21948347 (25 bp)
TTCCTGCATTGTGATTGTATTGTAA
LOC_Os09g38090
Os.11602.1.S1_at--777--1471Chr09:21948368..21948392 (25 bp)
AGAATTAGATTCCAACACTGTTTAT
LOC_Os09g38090
Os.11602.1.S1_at--804--7411Chr09:21948394..21948418 (25 bp)
GTGTTGTAAGTATTCATGTCATGTA
LOC_Os09g38090
Os.11602.1.S1_at--848--9911Chr09:21948434..21948458 (25 bp)
TACTGTTTCTGTAAGTTCACAAAGC
LOC_Os09g38090
Os.11602.1.S1_at--747--3211Chr09:21948487..21948511 (25 bp)
CAAGGTTACTTATGACTTATGAGTC
LOC_Os09g38090
Target Sequence 
TTCAAGGTGGCGAACATGCACGTCGGCGGCCTCCGGCTGAAGTCGGCCGACCGGCGTAACGTCTGGGACGGCGAGAAGCA
GCGGCTGACGGCGATGCNACTGGCTCGTCGCCTACGGGCTCGGCAAGGCCGGCAGGAAGGGGAGGACGGCGGCGGCGGCG
GGGAAATCCGGCCATGACGTGCTCTGGAGCATGTCGTCGAGGGTGATGGCCGACATGTGGCTCAAGCCGTTGCGCAACCC
TGACGTGAAGATCCCTCTCAAGTAGATGCTGCATTGCTGCCTCTGTGCTTCTCTGATGCTGAAAAAAAAAGAACATATTC
AAGCCNCGGTTCTCTTTATATTCTTCTGAATTTTGAAAGCTCAAGATTGTAATTTATACTTGNTTCCTGCATTGTGATTG
TATTGTAATGAGGAAATGTGAGTGTCTAAGAATTAGATTCCAACACTGTTTATTGTGTTGTAAGTATTCATGTCATGTAC
TGAAAGAGGCATAATACTGTTTCTGTAAGTTCACAAAGCTTAGTTCANAATGTACNAAAATNTTTGAACAAGGTTACTTA
TGACTTATGAGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11602.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis