Browse Element(s) Details


Os.11962.1.S1_at

Description gb:AF402804.1
DB_XREF= gi:15430730
TID=Os.11962.1
CNT=62
FEA=FLmRNA
TIER=FL+Stack
STK=15
UG=Os.11962 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) clone E3743_1A putative glutathione S-transferase OsGSTU17 mRNA, complete cds.
PROD=putative glutathione S-transferase OsGSTU17
FL= gb:AF402804.1 gb:AK099489.1 gb:AK060223.1 gb:AK061838.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2920011/11Glutathione S-transferase, N-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g29150NANA9+17728236..17728895hypothetical protein
LOC_Os09g29160Os.54056.1.S1_at11/119+17730573..17732251expressed protein
LOC_Os09g29170Os.18351.2.S1_at11/119+17733588..17737427Protein kinase domain containing protein, expressed
LOC_Os09g29170Os.18351.1.S1_at11/119+17733588..17737427Protein kinase domain containing protein, expressed
LOC_Os09g29170Os.18351.2.S1_x_at9/119+17733588..17737427Protein kinase domain containing protein, expressed
LOC_Os09g29180Os.41695.2.S1_x_at7/119+17739943..17741068hypothetical protein
LOC_Os09g29180Os.41695.3.S1_x_at7/119+17739943..17741068hypothetical protein
LOC_Os09g29180Os.41695.5.S1_x_at3/119+17739943..17741068hypothetical protein
LOC_Os09g29180Os.41695.4.S1_x_at1/119+17739943..17741068hypothetical protein
LOC_Os09g29190Os.9119.1.S1_at11/119+17741621..17745504Phosphoribosylaminoimidazole-succinocarboxamide synthase, chloroplast precursor, putative, expressed
LOC_Os09g29200Os.11962.1.S1_at11/119+17746186..17747739Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os09g29200Os.39243.1.A1_x_at2/119+17746186..17747739Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os09g29210Os.11962.2.A1_at11/119+17747183..17750262purine permease, putative, expressed
LOC_Os09g29210OsAffx.30073.1.S1_at10/119+17747183..17750262purine permease, putative, expressed
LOC_Os09g29210Os.11962.3.S1_x_at9/119+17747183..17750262purine permease, putative, expressed
LOC_Os09g29239Os.18356.2.S1_at11/119+17754699..17770402purine permease, putative, expressed
LOC_Os09g29239OsAffx.6436.1.S1_at11/119+17754699..17770402purine permease, putative, expressed
LOC_Os09g29239Os.18356.1.S1_x_at11/119+17754699..17770402purine permease, putative, expressed
LOC_Os09g29239OsAffx.1746.1.S1_at2/119+17754699..17770402purine permease, putative, expressed
LOC_Os09g29239Os.32889.2.S1_at1/119+17754699..17770402purine permease, putative, expressed
LOC_Os09g29239Os.10219.1.S1_at1/119+17754699..17770402purine permease, putative, expressed
LOC_Os09g29270Os.51207.1.S1_s_at11/119+17772463..17773353expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009407biological_processtoxin catabolism
GO:0005737cellular_componentcytoplasm
GO:0004364molecular_functionglutathione transferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11962.1.S1_at--9--1371Chr09:17746614..17747128 (25 bp)
AGAGAAGTGCAACGCTGCTCTGTAC
LOC_Os09g29200
Os.11962.1.S1_at--943--9091Chr09:17747119..17747143 (25 bp)
TGCTCTGTACCCGATCTTCATGACG
LOC_Os09g29200
Os.11962.1.S1_at--903--431Chr09:17747132..17747156 (25 bp)
ATCTTCATGACGACCGGAGAGGAGC
LOC_Os09g29200
Os.11962.1.S1_at--1044--1351Chr09:17747157..17747181 (25 bp)
AGAGAAAGCTGGTGCACGAGGCCCA
LOC_Os09g29200
Os.11962.1.S1_at--233--1531Chr09:17747181..17747205 (25 bp)
AGCAGTGCCTGAAGACGCTGGAGAC
LOC_Os09g29200
Os.11962.1.S1_at--1081--9971Chr09:17747249..17747273 (25 bp)
TACCTTGACATCGTCACCGGGTGGT
LOC_Os09g29200
Os.11962.1.S1_at--419--9671Chr09:17747262..17747286 (25 bp)
TCACCGGGTGGTTCGCCTACTGGCT
LOC_Os09g29200
Os.11962.1.S1_at--1036--8971Chr09:17747346..17747370 (25 bp)
TGAAGGCCTGGTTCGACCGGGTCCT
LOC_Os09g29200
Os.11962.1.S1_at--658--4491Chr09:17747436..17747460 (25 bp)
GCCGTGAGCAGATCCTCTCGGCGTA
LOC_Os09g29200
Os.11962.1.S1_at--244--3071Chr09:17747523..17747547 (25 bp)
AATAAGTTCGTCACAAGCACATTGT
LOC_Os09g29200
Os.11962.1.S1_at--876--5391Chr09:17747567..17747591 (25 bp)
GAAGCATGATCCGTCTTAGAGAGAC
LOC_Os09g29200
Target Sequence 
AGAGAAGTGCAACGCTGCTCTGTACCCGATCTTCATGACGACCGGAGAGGAGCAGAGAAAGCTGGTGCACGAGGCCCAGC
AGTGCCTGAAGACGCTGGAGACGGCCCTGGAGGGGAANGAAGTTCTTCGGCGGCGACGCCTTCGGCTACCTTGACATCGT
CACCGGGTGGTTCGCCTACTGGCTGCCGGTCATCGAGGAGGCCTGCGGCGTCGAAGTCGTCACCGACGAGGCGCTGCCCC
TGATGAAGGCCTGGTTCGACCGGGTCCTCGCCGTCGACGCCGTGAAGGCGGTCCTGCCGCCGAGGGACAAGCTCGTCGCG
CTCAANAAGGCTCGCCGTGAGCAGATCCTCTCGGCGTAGAGAGCACGGTCACTTCAGCTCCCCAGCTAGTACGTTTCATC
TCCATGGTCCATGGTTAAACAATAAGTTCGTCACAAGCACATTGTGCAGAAGTAGTAGATGCTCGAAGCATGATCCGTCT
TAGAGAGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11962.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis