Browse Element(s) Details


Os.11962.3.S1_x_at

Description gb:AK064135.1
DB_XREF= gi:32974153
TID=Os.11962.3
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11962 (NCBI UniGene Cluster)
UG_TITLE=Subsp. japonica putative glutathione S-transferase OsGSTU17 mRNA, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-102-G04, full insert sequence.
FL= gb:AK064135.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g292109/11purine permease, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g29150NANA9+17728236..17728895hypothetical protein
LOC_Os09g29160Os.54056.1.S1_at11/119+17730573..17732251expressed protein
LOC_Os09g29170Os.18351.2.S1_at11/119+17733588..17737427Protein kinase domain containing protein, expressed
LOC_Os09g29170Os.18351.1.S1_at11/119+17733588..17737427Protein kinase domain containing protein, expressed
LOC_Os09g29170Os.18351.2.S1_x_at9/119+17733588..17737427Protein kinase domain containing protein, expressed
LOC_Os09g29180Os.41695.2.S1_x_at7/119+17739943..17741068hypothetical protein
LOC_Os09g29180Os.41695.3.S1_x_at7/119+17739943..17741068hypothetical protein
LOC_Os09g29180Os.41695.5.S1_x_at3/119+17739943..17741068hypothetical protein
LOC_Os09g29180Os.41695.4.S1_x_at1/119+17739943..17741068hypothetical protein
LOC_Os09g29190Os.9119.1.S1_at11/119+17741621..17745504Phosphoribosylaminoimidazole-succinocarboxamide synthase, chloroplast precursor, putative, expressed
LOC_Os09g29200Os.11962.1.S1_at11/119+17746186..17747739Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os09g29200Os.39243.1.A1_x_at2/119+17746186..17747739Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os09g29210Os.11962.2.A1_at11/119+17747183..17750262purine permease, putative, expressed
LOC_Os09g29210OsAffx.30073.1.S1_at10/119+17747183..17750262purine permease, putative, expressed
LOC_Os09g29210Os.11962.3.S1_x_at9/119+17747183..17750262purine permease, putative, expressed
LOC_Os09g29239Os.18356.2.S1_at11/119+17754699..17770402purine permease, putative, expressed
LOC_Os09g29239OsAffx.6436.1.S1_at11/119+17754699..17770402purine permease, putative, expressed
LOC_Os09g29239Os.18356.1.S1_x_at11/119+17754699..17770402purine permease, putative, expressed
LOC_Os09g29239OsAffx.1746.1.S1_at2/119+17754699..17770402purine permease, putative, expressed
LOC_Os09g29239Os.32889.2.S1_at1/119+17754699..17770402purine permease, putative, expressed
LOC_Os09g29239Os.10219.1.S1_at1/119+17754699..17770402purine permease, putative, expressed
LOC_Os09g29270Os.51207.1.S1_s_at11/119+17772463..17773353expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006863biological_processpurine transport
GO:0010184biological_processcytokinin transport
GO:0005887cellular_componentintegral to plasma membrane
GO:0005345molecular_functionpurine transporter activity
GO:0015211molecular_functionpurine nucleoside transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11962.3.S1_x_at--213--9691Chr09:17749435..17749459 (25 bp)
TCACGTACACGCTCGTCATGGAGAT
LOC_Os09g29210
Os.11962.3.S1_x_at--77--3511Chr09:17749419..17749443 (25 bp)
CATGGAGATGCAGCTCGTCATCGGC
LOC_Os09g29210
Os.11962.3.S1_x_at--1148--611Chr09:17749364..17749388 (25 bp)
ATGCTCGTCAACAACGATTTCCACG
LOC_Os09g29210
Os.11962.3.S1_x_at--914--6511NONE
GATTTCCACGCAATCCCAGGAGAAG
NONE
Os.11962.3.S1_x_at--195--971Chr09:17748022..17748046 (25 bp)
AGGAGAAGCCCATGAATTCGGTCTG
LOC_Os09g29210
Os.11962.3.S1_x_at--928--9431Chr09:17748005..17748029 (25 bp)
TCGGTCTGGGCCAAGCGGGCTACTA
LOC_Os09g29210
Os.11962.3.S1_x_at--1069--6391NONE
GATCGGCTGCCATGTACCAGTGCTT
NONE
Os.11962.3.S1_x_at--13--7131Chr09:17747847..17747871 (25 bp)
GTCATGTTCTTCCACGAGCCATTCA
LOC_Os09g29210
Os.11962.3.S1_x_at--681--111Chr09:17747827..17747851 (25 bp)
ATTCAACGGCACAAAGGGCGTCGCG
LOC_Os09g29210
Os.11962.3.S1_x_at--98--10631Chr09:17747781..17747805 (25 bp)
TTCGTCTCCTACTTCTACGGCGAGG
LOC_Os09g29210
Os.11962.3.S1_x_at--959--2551Chr09:17747651..17747675 (25 bp)
AACTGTACTGTATTTTTCCTCTTGA
LOC_Os09g29210
Target Sequence 
TCACGTACACGCTCGTCATGGAGATGCAGCTCGTCATCGGCTTCGTCGCCACGGCCTTCAGCGCCGTCGGCATGCTCGTC
AACAACGATTTCCACGCAATCCCAGGAGAAGCCCATGAATTCGGTCTGGGCCAAGCGGGCTACTACCTGCTCCTGGCCGG
ATCGGCTGCCATGTACCAGTGCTTCTTCCTCGGCACGATCGGCGCCATCTTCTACGGCTCGGCGCTGCTCGCCGGCGTCA
TCATGACCGTGCTCATCCCGGTCACCGAGGTGCTCGCCGTCATGTTCTTCCACGAGCCATTCAACGGCACAAAGGGCGTC
GCGCTCGCTCTCTCGCTATGGGGCTTCGTCTCCTACTTCTACGGCGAGGTCCGGGCGGCCAAGGCGGCGCATCGCCGCCG
CCACTCCGACGAGCCCCCAAAACCGGACCATTTGGACCCTTAATTAGAATGATCAGATCACTACAAAAGTACAAAACTGT
ACTGTATTTTTCCTCTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11962.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis