Browse Element(s) Details


Os.154.1.S1_at

Description gb:D45217.1
DB_XREF= gi:639683
TID=Os.154.1
CNT=30
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.154 (NCBI UniGene Cluster)
DEF=Rice mRNA for phosphoglucose isomerase (Pgi-a), complete cds.
PROD=phosphoglucose isomerase (Pgi-a)
FL= gb:AK103010.1 gb:D45217.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5646011/11Glucose-6-phosphate isomerase, cytosolic A, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g56390Os.33461.2.S1_x_at11/113+32086154..32089571radical S-adenosyl methionine and flavodoxin domains 1, isoform 1, putative, expressed
LOC_Os03g56390Os.33461.1.S1_at8/113+32086154..32089571radical S-adenosyl methionine and flavodoxin domains 1, isoform 1, putative, expressed
LOC_Os03g56400Os.31426.1.S1_at11/113+32089763..32092323pentatricopeptide, putative, expressed
LOC_Os03g56410Os.45029.1.S1_at10/113+32092866..32096290expressed protein
LOC_Os03g56420Os.17939.2.S1_at11/113+32099176..32103168dehydrogenase, putative, expressed
LOC_Os03g56420OsAffx.3623.1.S1_at11/113+32099176..32103168dehydrogenase, putative, expressed
LOC_Os03g56420Os.21038.1.S1_s_at11/113+32099176..32103168dehydrogenase, putative, expressed
LOC_Os03g56420Os.17939.3.S1_x_at10/113+32099176..32103168dehydrogenase, putative, expressed
LOC_Os03g56420Os.17939.3.S1_at10/113+32099176..32103168dehydrogenase, putative, expressed
LOC_Os03g56420Os.17939.1.S1_x_at10/113+32099176..32103168dehydrogenase, putative, expressed
LOC_Os03g56430Os.14809.1.S1_at10/113+32103817..32107382expressed protein
LOC_Os03g56440OsAffx.22667.1.S1_at11/113+32108130..32109149F-box domain containing protein
LOC_Os03g56450OsAffx.22666.1.S1_at11/113+32109465..32110868F-box domain containing protein
LOC_Os03g56460Os.154.1.S1_at11/113+32114232..32121040Glucose-6-phosphate isomerase, cytosolic A, putative, expressed
LOC_Os03g56460Os.57457.1.S1_x_at9/113+32114232..32121040Glucose-6-phosphate isomerase, cytosolic A, putative, expressed
LOC_Os03g56470Os.45026.1.S1_at11/113+32121818..32124206Protein kinase domain containing protein, expressed
LOC_Os03g56470OsAffx.28262.1.S1_x_at1/113+32121818..32124206Protein kinase domain containing protein, expressed
LOC_Os03g56480OsAffx.25734.1.S1_at11/113+32126272..32128185hypothetical protein
LOC_Os03g56490OsAffx.25735.2.S1_x_at11/113+32128886..32131099hypothetical protein
LOC_Os03g56490OsAffx.25735.1.S1_x_at5/113+32128886..32131099hypothetical protein
LOC_Os03g56500Os.17985.1.S1_s_at11/113+32132503..32134032expressed protein
LOC_Os03g56500Os.27147.1.S1_at11/113+32132503..32134032expressed protein
LOC_Os03g56510OsAffx.25736.1.S1_at11/113+32135324..32136445F-box domain containing protein
LOC_Os03g56520OsAffx.3624.1.S1_at11/113+32139531..32140222hypothetical protein
LOC_Os03g56530OsAffx.22664.1.S1_at10/113+32140799..32146457retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0005982biological_processstarch metabolism
GO:0006094biological_processgluconeogenesis
GO:0006096biological_processglycolysis
GO:0009911biological_processpositive regulation of flower development
GO:0009536cellular_componentplastid
GO:0004347molecular_functionglucose-6-phosphate isomerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.154.1.S1_at--980--8631Chr03:32120189..32120378 (25 bp)
TGGGCAAGTCTCTTGCCTCTCAAGT
LOC_Os03g56460
Os.154.1.S1_at--1079--451Chr03:32120385..32120409 (25 bp)
ATCTCTACATGCATCCCGCGTTGAA
LOC_Os03g56460
Os.154.1.S1_at--1070--2171Chr03:32120621..32120645 (25 bp)
ACACTACCACACTGCCGAAAGTTTG
LOC_Os03g56460
Os.154.1.S1_at--1125--9151Chr03:32120633..32120657 (25 bp)
TGCCGAAAGTTTGACACGACACGTT
LOC_Os03g56460
Os.154.1.S1_at--452--10751Chr03:32120643..32120667 (25 bp)
TTGACACGACACGTTTGGCACGCTA
LOC_Os03g56460
Os.154.1.S1_at--354--2171Chr03:32120651..32120675 (25 bp)
ACACGTTTGGCACGCTATTGTCTTG
LOC_Os03g56460
Os.154.1.S1_at--304--6551Chr03:32120686..32120710 (25 bp)
GATTACTAGAGTCTTCATATCTTGT
LOC_Os03g56460
Os.154.1.S1_at--93--9771Chr03:32120719..32120743 (25 bp)
TAAGTTCGTTTTGGAGTTGTTACAG
LOC_Os03g56460
Os.154.1.S1_at--798--8291Chr03:32120743..32120767 (25 bp)
GGCTTACAGCCAGTTCTACAGTACT
LOC_Os03g56460
Os.154.1.S1_at--749--9871Chr03:32120759..32120783 (25 bp)
TACAGTACTGTAGTTTCGTTGTTTT
LOC_Os03g56460
Os.154.1.S1_at--736--1971Chr03:32120788..32120812 (25 bp)
TACTCCGACCTCCAGGAAACGAAAT
LOC_Os03g56460
Target Sequence 
TGGGCAAGTCTCTTGCCTCTCAAGTGAGAAAATCTCTACATGCATCCCGCGTTGAAGGAAAGCCTGTCCTGGGGTTTAAC
AGCAGTACTACAAGTTTGCTGACACGATATCTTGCTGTTGAGCCATCCACTCCTTACAACACTACCACACTGCCGAAAGT
TTGACACGACACGTTTGGCACGCTATTGTCTTGAGTTAAACAAGATTACTAGAGTCTTCATATCTTGTAATAAGTTTAAG
TTCGTTTTGGAGTTGTTACAGGCTTACAGCCAGTTCTACAGTACTGTAGTTTCGTTGTTTTCCTTTACTCCGACCTCCAG
GAAACGAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.154.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis