Browse Element(s) Details


Os.17125.1.S1_at

Description gb:AK065893.1
DB_XREF= gi:32975911
TID=Os.17125.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17125 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013043E20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013043E20, full insert sequence.
FL= gb:AK065893.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4109011/11Peroxidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g41020NANA8+25810938..25815327retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g41030Os.55500.1.S1_at11/118+25817415..25818314AP2 domain containing protein, expressed
LOC_Os08g41040Os.17091.1.S1_at11/118+25820114..25821925expressed protein
LOC_Os08g41054OsAffx.17446.1.S1_at11/118+25823463..25825192hypothetical protein
LOC_Os08g41054OsAffx.6099.1.S1_at11/118+25823463..25825192hypothetical protein
LOC_Os08g41054OsAffx.6099.1.S1_x_at11/118+25823463..25825192hypothetical protein
LOC_Os08g41070OsAffx.28903.2.S1_x_at11/118+25826008..25833843expressed protein
LOC_Os08g41070OsAffx.28903.2.S1_at10/118+25826008..25833843expressed protein
LOC_Os08g41070OsAffx.28903.1.S1_x_at7/118+25826008..25833843expressed protein
LOC_Os08g41070Os.50232.1.S1_x_at1/118+25826008..25833843expressed protein
LOC_Os08g41080Os.57155.1.S1_at3/118+25838216..25838446expressed protein
LOC_Os08g41090Os.17125.1.S1_at11/118+25838921..25842038Peroxidase family protein, expressed
LOC_Os08g41100Os.9173.1.S1_at11/118+25842624..25844598Chitinase class I family protein, expressed
LOC_Os08g41110Os.17116.1.S1_at11/118+25846641..25851174Chaperone protein dnaJ 10, putative, expressed
LOC_Os08g41120NANA8+25851411..25852436BTB/POZ domain containing protein
LOC_Os08g41130NANA8+25855367..25858078transposon protein, putative, Mutator sub-class
LOC_Os08g41140OsAffx.22940.2.S1_s_at11/118+25858437..25862921hypothetical protein
LOC_Os08g41140OsAffx.22940.1.S1_s_at10/118+25858437..25862921hypothetical protein
LOC_Os08g41140OsAffx.22940.5.S1_at10/118+25858437..25862921hypothetical protein
LOC_Os08g41140OsAffx.22940.5.S1_x_at10/118+25858437..25862921hypothetical protein
LOC_Os08g41140OsAffx.22940.3.S1_x_at9/118+25858437..25862921hypothetical protein
LOC_Os08g41140Os.35344.3.S1_x_at8/118+25858437..25862921hypothetical protein
LOC_Os08g41140Os.35344.18.S1_x_at6/118+25858437..25862921hypothetical protein
LOC_Os08g41140OsAffx.31552.2.S1_at1/118+25858437..25862921hypothetical protein
LOC_Os08g41140OsAffx.22940.2.S1_at1/118+25858437..25862921hypothetical protein
LOC_Os08g41150OsAffx.21997.5.S1_at11/118+25864777..25865856BTB/POZ domain containing protein
LOC_Os08g41150OsAffx.21997.3.S1_x_at1/118+25864777..25865856BTB/POZ domain containing protein
LOC_Os08g41160Os.47463.1.S1_x_at4/118+25866293..25876009transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g41160Os.14491.2.S1_x_at3/118+25866293..25876009transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0000302biological_processresponse to reactive oxygen species
GO:0009408biological_processresponse to heat
GO:0005737cellular_componentcytoplasm
GO:0005829cellular_componentcytosol
GO:0004601molecular_functionperoxidase activity
GO:0016688molecular_functionL-ascorbate peroxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17125.1.S1_at--1074--431Chr08:25839746..25839946 (25 bp)
ATCTTCATCTGGCATGCCGGCAATG
LOC_Os08g41090
Os.17125.1.S1_at--203--9191Chr08:25839732..25839756 (25 bp)
TGCCGGCAATGGTAGGACTGCGAAC
LOC_Os08g41090
Os.17125.1.S1_at--861--2571Chr08:25839710..25839734 (25 bp)
AACGGATTGGGCACTCACTGAAGAT
LOC_Os08g41090
Os.17125.1.S1_at--773--7951Chr08:25839412..25839436 (25 bp)
GGATCAATTTATATGCACAGGACCA
LOC_Os08g41090
Os.17125.1.S1_at--526--1951Chr08:25839338..25839362 (25 bp)
ACTGGAGCCTCATGGAGATCAGCTT
LOC_Os08g41090
Os.17125.1.S1_at--1027--6431Chr08:25839322..25839346 (25 bp)
GATCAGCTTAATTTTACTCGCACAC
LOC_Os08g41090
Os.17125.1.S1_at--300--10071Chr08:25839283..25839307 (25 bp)
TAGGCTATTAGGCACGATTCAAACG
LOC_Os08g41090
Os.17125.1.S1_at--422--8031Chr08:25839135..25839159 (25 bp)
GGAGTTTCGAACATGAATCCAACAA
LOC_Os08g41090
Os.17125.1.S1_at--127--10031Chr08:25839049..25839073 (25 bp)
TAGACAATCAAAATCCTCCTTATAT
LOC_Os08g41090
Os.17125.1.S1_at--365--7591Chr08:25839011..25839035 (25 bp)
GGGCTAATAAATCATGCAGTTCTGT
LOC_Os08g41090
Os.17125.1.S1_at--952--8251Chr08:25838927..25838951 (25 bp)
GGCAGCGTTCTTTTCTGAAACTTCA
LOC_Os08g41090
Target Sequence 
ATCTTCATCTGGCATGCCGGCAATGGTAGGACTGCGAACGGATTGGGCACTCACTGAAGATGATGAATGCTTAAGATGGA
TCAATTTATATGCACAGGACCAAGCTAANTTTTTTNCCGACTTCAAGGATGCATNCATCAAGCTTGTAAATACTGGAGCC
TCATGGAGATCAGCTTAATTTTACTCGCACACAGCTCTCTCTNNTGTAGGCTATTAGGCACGATTCAAACGTAGGANCCT
CAGAGAATTTTTGTGGAAAACNAAGCNATGGAGGTCTGGATTTCTTAATATTTACTCCAAAGACAAGCTTTCACCGTAAA
TTTCTTACTGTTACGAAATCATAGTCATTAAATAGGAGTTTCGAACATGAATCCAACAAATATATTTTTGTATAGCAAAA
CCTATATATTATTTTATTACCAAGGGTCAAAGCATAGAACTAGACAATCAAAATCCTCCTTATATTTTTGAATGTAGGGG
GCTAATAAATCATGCAGTTCTGTAGGATATATTTTCAACAAACATCAATAAGGAATGTAAGAATTGGAACTTTCATGTTA
AAGGCAGCGTTCTTTTCTGAAACTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17125.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis