Browse Element(s) Details


Os.21387.3.S1_x_at

Description gb:AK062412.1
DB_XREF= gi:32972430
TID=Os.21387.3
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.21387 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) lipase-like protein (OJ1159_D09.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-102-F03, full insert sequence.
FL= gb:AK062412.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g461699/11GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g461303/11expressed protein
LOC_Os02g095691/11hypothetical protein
LOC_Os05g224501/11hypothetical protein
LOC_Os01g460801/11GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g461201/11GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os03g363301/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g139801/11transposon protein, putative, unclassified
LOC_Os12g086501/11hypothetical protein
LOC_Os07g253201/11hypothetical protein
LOC_Os11g218401/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g46120Os.14232.1.S1_at11/111+26549465..26551967GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46120Os.34087.1.S1_x_at3/111+26549465..26551967GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46120Os.21387.3.S1_x_at1/111+26549465..26551967GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46130Os.34087.1.S1_x_at11/111+26557586..26561459expressed protein
LOC_Os01g46130Os.34087.3.S1_at10/111+26557586..26561459expressed protein
LOC_Os01g46130Os.21387.3.S1_x_at3/111+26557586..26561459expressed protein
LOC_Os01g46140Os.34087.2.A1_at11/111+26562616..26565132expressed protein
LOC_Os01g46140Os.34087.2.A1_x_at11/111+26562616..26565132expressed protein
LOC_Os01g46140Os.34087.4.S1_x_at7/111+26562616..26565132expressed protein
LOC_Os01g46140Os.27037.1.A1_at1/111+26562616..26565132expressed protein
LOC_Os01g46140Os.21387.2.S1_s_at1/111+26562616..26565132expressed protein
LOC_Os01g46140Os.35566.1.A1_x_at1/111+26562616..26565132expressed protein
LOC_Os01g46169Os.21387.2.S1_s_at11/111+26576234..26601032GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169OsAffx.839.1.S1_at11/111+26576234..26601032GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169OsAffx.23683.1.S1_at11/111+26576234..26601032GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169Os.35566.1.A1_x_at11/111+26576234..26601032GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169Os.21387.3.S1_at10/111+26576234..26601032GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169Os.21387.3.S1_x_at9/111+26576234..26601032GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169Os.43567.1.S1_x_at8/111+26576234..26601032GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169Os.34087.4.S1_x_at6/111+26576234..26601032GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169Os.34087.1.S1_x_at4/111+26576234..26601032GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169Os.38172.1.S1_x_at4/111+26576234..26601032GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169Os.53217.1.S1_x_at3/111+26576234..26601032GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169Os.50463.1.S1_at1/111+26576234..26601032GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169Os.34087.2.A1_x_at1/111+26576234..26601032GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169OsAffx.32238.1.S1_x_at1/111+26576234..26601032GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46200Os.33614.1.S1_at11/111+26604924..26611785expressed protein
LOC_Os01g46200Os.53065.1.S1_at11/111+26604924..26611785expressed protein
LOC_Os01g46210OsAffx.2251.1.S1_at11/111+26613289..26614758GDSL-like Lipase/Acylhydrolase family protein
LOC_Os01g46220OsAffx.9221.1.S1_at11/111+26617082..26619075GDSL-like Lipase/Acylhydrolase family protein
LOC_Os01g46230NANA1+26620053..26621849pentatricopeptide, putative
LOC_Os01g46240OsAffx.11486.1.S1_s_at11/111+26623542..26625455lipase class 3 family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016298molecular_functionlipase activity
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21387.3.S1_x_at--794--3651Chr01:26576791..26576815 (25 bp)
CTTCTTCTGGGAGAGAGGCGTGCAC
LOC_Os01g46169
Os.21387.3.S1_x_at--1070--5634Chr01:26576822..26576846 (25 bp)
GACACCGTGCACCTCGACATGGAGA
LOC_Os01g46169
Os.21387.3.S1_x_at--176--8052Chr01:26576842..26576866 (25 bp)
GGAGATGAACTGGTTCCGCGATCTG
LOC_Os01g46169
Os.21387.3.S1_x_at--931--9092Chr01:26576874..26576897 (24 bp)
TGCTCTGCCCAGACGATCTTGCCGA
LOC_Os01g46169
Os.21387.3.S1_x_at--214--1851NONE
ACGATCTTGCCGAGACCGAGGGAGC
NONE
Os.21387.3.S1_x_at--14--1751NONE
ACCTTGAGCAAGAAGCGGGAGATGA
NONE
Os.21387.3.S1_x_at--792--855Chr07:23941506..23941530 (25 bp)
ATGGCATGCCGCTGCTTAAATTCTG
NONE
Os.21387.3.S1_x_at--947--9035Chr07:23941518..23941542 (25 bp)
TGCTTAAATTCTGCTGCCTTACCTA
NONE
Os.21387.3.S1_x_at--276--2258Chr07:23941523..23941547 (25 bp)
AAATTCTGCTGCCTTACCTATTTCT
NONE
Os.21387.3.S1_x_at--132--9396Chr07:23941620..23941644 (25 bp)
TCGTACTAGACATTCGTGTATGTGT
NONE
Os.21387.3.S1_x_at--629--743101Chr12:13477670..13477700 (25 bp)
GTGTATTTGGTATTTCAGCTATGAA
NONE
Target Sequence 
CTTCTTCTGGGAGAGAGGCGTGCACGTGCGCGACACCGTGCACCTCGACATGGAGATGAACTGGTTCCGCGATCTGCTCG
GCCTGCTCTGCCCAGACGATCTTGCCGAGACCGAGGGAGCCACGGATCCGGGTGAAGGCCAAGACCCGCAAGACCTTGAG
CAAGAAGCGGGAGATGAAGCTTCGGAGGATCCCTATGCCTACTACCAGGAGGGAGATGAAGACGAAGGCGCCCAGTAGGT
CTTAGTACGGTCGTTGCCTGTGGCAATGGCATGCCGCTGCTTAAATTCTGCTGCCTTACCTATTTCTGCTTTTGGATGTA
TTCCGGACCGCTCGGTCCGATGATTTAAGACTATGCCTGCAGGCTTATGATGTAATAATTCGTACTAGACATTCGTGTAT
GTGTATTTGGTATTTCAGCTATGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21387.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis