Browse Element(s) Details


Os.23431.1.A1_at

Description gb:AK121443.1
DB_XREF= gi:37991066
TID=Os.23431.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23431 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023140O18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023140O18, full insert sequence.
FL= gb:AK121443.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0437011/11ribosomal protein L24 containing protein, expressed
LOC_Os12g041603/11ribosomal protein L24 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g04300Os.46781.1.S1_at2/1111+1780699..1791875phosphoglycerate mutase family protein, expressed
LOC_Os11g04300Os.6654.1.S1_at2/1111+1780699..1791875phosphoglycerate mutase family protein, expressed
LOC_Os11g04300OsAffx.10222.1.S1_at1/1111+1780699..1791875phosphoglycerate mutase family protein, expressed
LOC_Os11g04300Os.51841.1.S1_x_at1/1111+1780699..1791875phosphoglycerate mutase family protein, expressed
LOC_Os11g04300OsAffx.24379.1.S1_at1/1111+1780699..1791875phosphoglycerate mutase family protein, expressed
LOC_Os11g04300OsAffx.10222.1.S1_x_at1/1111+1780699..1791875phosphoglycerate mutase family protein, expressed
LOC_Os11g04300Os.45902.1.A1_x_at1/1111+1780699..1791875phosphoglycerate mutase family protein, expressed
LOC_Os11g04310NANA11+1794376..1795923Cytochrome P450 family protein
LOC_Os11g04320OsAffx.31572.1.S1_at11/1111+1797789..1799337phosphoglycerate mutase family protein, expressed
LOC_Os11g04330Os.56229.1.S1_at11/1111+1800185..1801663Kelch motif family protein, expressed
LOC_Os11g04340OsAffx.6993.1.S1_at11/1111+1804515..1805027hypothetical protein
LOC_Os11g04350Os.50916.1.S1_at11/1111+1807130..1808535HSR203J, putative, expressed
LOC_Os11g04360OsAffx.19482.2.S1_x_at11/1111+1810758..1812624cell death associated protein, putative
LOC_Os11g04360OsAffx.19482.1.S1_at5/1111+1810758..1812624cell death associated protein, putative
LOC_Os11g04360Os.5943.1.S1_at1/1111+1810758..1812624cell death associated protein, putative
LOC_Os11g04370Os.23431.1.A1_at11/1111+1812629..1815757ribosomal protein L24 containing protein, expressed
LOC_Os11g04370OsAffx.19483.1.S1_s_at10/1111+1812629..1815757ribosomal protein L24 containing protein, expressed
LOC_Os11g04370OsAffx.19483.1.S1_at2/1111+1812629..1815757ribosomal protein L24 containing protein, expressed
LOC_Os11g04380Os.55139.1.S1_at11/1111+1817917..1819505phosphate translocator, putative, expressed
LOC_Os11g04380OsAffx.19217.1.S1_x_at2/1111+1817917..1819505phosphate translocator, putative, expressed
LOC_Os11g04390Os.12347.1.S1_x_at11/1111+1820374..1827290RNA recognition motif family protein, expressed
LOC_Os11g04390Os.12347.4.S1_x_at10/1111+1820374..1827290RNA recognition motif family protein, expressed
LOC_Os11g04400Os.53517.2.S1_at1/1111+1828395..1831070GRAS family transcription factor containing protein
LOC_Os11g04409Os.4757.1.S1_at1/1111+1836657..1836818NA
LOC_Os11g04420Os.6869.1.S1_s_at11/1111+1837690..1846851Uncharacterised protein family containing protein, expressed
LOC_Os11g04420Os.6869.1.S1_at11/1111+1837690..1846851Uncharacterised protein family containing protein, expressed
LOC_Os11g04420Os.27194.1.A1_a_at9/1111+1837690..1846851Uncharacterised protein family containing protein, expressed
LOC_Os11g04420Os.27194.2.A1_x_at6/1111+1837690..1846851Uncharacterised protein family containing protein, expressed
LOC_Os11g04420OsAffx.30813.1.A1_at4/1111+1837690..1846851Uncharacterised protein family containing protein, expressed
LOC_Os11g04420Os.12342.1.S2_at2/1111+1837690..1846851Uncharacterised protein family containing protein, expressed
LOC_Os11g04420Os.4757.1.S1_at2/1111+1837690..1846851Uncharacterised protein family containing protein, expressed
LOC_Os11g04420Os.12342.1.S1_at1/1111+1837690..1846851Uncharacterised protein family containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0015934cellular_componentlarge ribosomal subunit
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23431.1.A1_at--1156--7772Chr12:1747099..1747123 (25 bp)
GGTGCTGTGATACCCAGGCCAGAAA
LOC_Os12g04160
Os.23431.1.A1_at--74--5372Chr12:1747063..1747086 (24 bp)
GAAGAAAGCCAAGACCTACATCACC
LOC_Os12g04160
Os.23431.1.A1_at--709--9531Chr11:1812855..1812879 (25 bp)
TCTATAGGCTAGTTCTGTCTGGGTT
LOC_Os11g04370
Os.23431.1.A1_at--944--9391Chr11:1812842..1812866 (25 bp)
TCTGTCTGGGTTGCTACTCAGGGAG
LOC_Os11g04370
Os.23431.1.A1_at--374--8671Chr11:1812806..1812830 (25 bp)
TGTGTGACAACACCCCAGTTCAGAT
LOC_Os11g04370
Os.23431.1.A1_at--865--931Chr11:1812778..1812802 (25 bp)
AGGAAGTCTGTCCTCAACTTTGCAC
LOC_Os11g04370
Os.23431.1.A1_at--974--10732Chr12:1746308..1746332 (25 bp)
TTGCACCTGTATTGCTCTCGAAATA
LOC_Os12g04160
Os.23431.1.A1_at--635--8971Chr11:1812718..1812742 (25 bp)
TGAAAAAGCATCACCCGCATGTTTT
LOC_Os11g04370
Os.23431.1.A1_at--328--1811Chr11:1812706..1812730 (25 bp)
ACCCGCATGTTTTTAGTCTCTGTTT
LOC_Os11g04370
Os.23431.1.A1_at--1057--7871Chr11:1812680..1812704 (25 bp)
GGTTAGATTCTTTATCCCACTGGAA
LOC_Os11g04370
Os.23431.1.A1_at--448--10152Chr12:1746217..1746240 (24 bp)
TATCCCACTGGAAATGCACATACAT
NONE
Target Sequence 
GGTGCTGTGATACCCAGGCCAGAAATTTTGAAGGAGCGAAGAAAGCCAAGACCTACATCACCTGGCCCAAAGGATACACC
AATTGAGCATGTGCTGGAGAAAACCTATGATGCCAAGGCTGGAATTGGGATGCCTGATCTATAGGCTAGTTCTGTCTGGG
TTGCTACTCAGGGAGAGTTCATTGTATGTGTGACAACACCCCAGTTCAGATAGCAGGAAGTCTGTCCTCAACTTTGCACC
TGTATTGCTCTCGAAATAATTTTGTAATGGTCACTGAAAAAGCATCACCCGCATGTTTTTAGTCTCTGTTTTGGTTAGAT
TCTTTATCCCACTGGAAATGCACATACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23431.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis