Browse Element(s) Details


Os.2449.1.S1_s_at

Description gb:AF242298.1
DB_XREF= gi:9716452
TID=Os.2449.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.2449 (NCBI UniGene Cluster)
DEF=Oryza sativa telomere binding protein-1 mRNA, complete cds.
PROD=telomere binding protein-1
FL= gb:AF242298.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5727011/11Myb-like DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g57220Os.18424.1.S1_at11/112+35051067..35056660Actin-related protein 2/3 complex subunit 1B, putative, expressed
LOC_Os02g57230OsAffx.29218.1.S1_s_at8/112+35057895..35061034retrotransposon protein, putative, unclassified
LOC_Os02g57230OsAffx.380.1.S1_at3/112+35057895..35061034retrotransposon protein, putative, unclassified
LOC_Os02g57230OsAffx.29576.2.S1_x_at1/112+35057895..35061034retrotransposon protein, putative, unclassified
LOC_Os02g57230OsAffx.2057.3.S1_at1/112+35057895..35061034retrotransposon protein, putative, unclassified
LOC_Os02g57230OsAffx.13325.1.S1_at1/112+35057895..35061034retrotransposon protein, putative, unclassified
LOC_Os02g57240Os.2240.1.S1_at11/112+35062109..35066743Voltage-gated potassium channel beta-1 subunit, putative, expressed
LOC_Os02g57250Os.4806.1.S1_at11/112+35067502..35069930Auxin-responsive protein IAA13, putative, expressed
LOC_Os02g57260Os.8733.1.S1_at11/112+35075010..350793303-ketoacyl-CoA thiolase 2, peroxisomal precursor, putative, expressed
LOC_Os02g57270Os.2449.1.S1_s_at11/112+35080221..35084790Myb-like DNA-binding domain containing protein, expressed
LOC_Os02g57290Os.35294.1.S1_at11/112+35085325..35093422Cytochrome P450 family protein, expressed
LOC_Os02g57280Os.12129.1.S1_a_at11/112+35086471..35088446CBS domain containing protein, expressed
LOC_Os02g57300OsAffx.3092.1.S1_at11/112+35094388..35094906hypothetical protein
LOC_Os02g57310Os.53629.1.S1_x_at11/112+35107768..35112900Resistance protein, putative, expressed
LOC_Os02g57310Os.35493.1.S1_at11/112+35107768..35112900Resistance protein, putative, expressed
LOC_Os02g57310Os.51470.1.S1_at11/112+35107768..35112900Resistance protein, putative, expressed
LOC_Os02g57310Os.53629.1.S1_at11/112+35107768..35112900Resistance protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2449.1.S1_s_at--691--4891Chr02:35081138..35081162 (25 bp)
GCTTATGCAAGATTTTCCAGGCTGC
LOC_Os02g57270
Os.2449.1.S1_s_at--981--1251Chr02:35081129..35081153 (25 bp)
AGATTTTCCAGGCTGCAGCTTGAGT
LOC_Os02g57270
Os.2449.1.S1_s_at--934--5051Chr02:35081115..35081139 (25 bp)
GCAGCTTGAGTGATCCTGGTTCTGT
LOC_Os02g57270
Os.2449.1.S1_s_at--551--551Chr02:35081103..35081127 (25 bp)
ATCCTGGTTCTGTTGATTATCCCGT
LOC_Os02g57270
Os.2449.1.S1_s_at--541--6551Chr02:35081089..35081113 (25 bp)
GATTATCCCGTGGAATGGAGCACAC
LOC_Os02g57270
Os.2449.1.S1_s_at--924--10391Chr02:35081030..35081054 (25 bp)
TTTTGCAGATCCAAACTCACTGGCG
LOC_Os02g57270
Os.2449.1.S1_s_at--331--7091Chr02:35080982..35081006 (25 bp)
GTCAAAGCGACCAGATTTTGGGCAA
LOC_Os02g57270
Os.2449.1.S1_s_at--14--8431Chr02:35080944..35080968 (25 bp)
GGCCTTTCACTGTTGCTGAAGTGGA
LOC_Os02g57270
Os.2449.1.S1_s_at--266--6131Chr02:35080778..35080802 (25 bp)
GAGGGACGTCAAATTCCGCGCATTT
LOC_Os02g57270
Os.2449.1.S1_s_at--768--1091Chr02:35080612..35080636 (25 bp)
AGTGGAAGACCCTGGTGCACACGGC
LOC_Os02g57270
Os.2449.1.S1_s_at--680--8411Chr02:35080413..35080437 (25 bp)
GGCCCTCGTGTACAAATCGGTGTAA
LOC_Os02g57270
Target Sequence 
GCTTATGCAAGATTTTCCAGGCTGCAGCTTGAGTGATCCTGGTTCTGTTGATTATCCCGTGGAATGGAGCACACAAGAAA
CATCAGCAAGCTCCCAAGCCATCGTCCCTTTTGCAGATCCAAACTCACTGGCGCTGGCCAATGTGCNGCTTTCTAGGTCA
AAGCGACCAGATTTTGGGCAAAGACGGATAAGGAGGCCTTTCACTGTTGCTGAAGTGGAGTTGCTGGTGGAAGCCGTCGA
GCACCTTGGAACAGGAAGGTGGAGGGACGTCAAATTCCGCGCATTTGAAAATGTTCATCATAGGACCTATGTTGATCTGA
AGGACAAGTGGAAGACCCTGGTGCACACGGCGAGCATAGCGCCGCAGCAAAGAAGGGGAGCTCCAGTTCCACAGGAACTC
CTGGACCGTGTGCTCGCCGCACAGGCCTACTGGTCGGAGCAGCAGGCAAAGCTCCATGGCGATCCCCCTGTTCCTGAAAT
CTGCCCTACCTGATCCTGATGATGATTGATGGAGAAGGCAAGAATGGCCCTCGTGTACAAATCGGTGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2449.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis