Browse Element(s) Details


Os.24708.1.S1_at

Description gb:AK064167.1
DB_XREF= gi:32974185
TID=Os.24708.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24708 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative RNA helicase (OSJNBa0036M16.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-103-H11, full insert sequence.
FL= gb:AK064167.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3334011/11DEAD/DEAH box helicase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g33290OsAffx.10075.1.S1_at4/117+19902255..19903268hypothetical protein
LOC_Os07g33300OsAffx.5514.2.S1_at11/117+19903331..19907930expressed protein
LOC_Os07g33300Os.28197.1.S2_at11/117+19903331..19907930expressed protein
LOC_Os07g33300Os.28197.1.S1_a_at10/117+19903331..19907930expressed protein
LOC_Os07g33300OsAffx.5514.1.S1_x_at4/117+19903331..19907930expressed protein
LOC_Os07g33310Os.14708.1.S1_at11/117+19909672..19912872MATE efflux family protein, expressed
LOC_Os07g33310Os.14708.2.S1_at5/117+19909672..19912872MATE efflux family protein, expressed
LOC_Os07g33320OsAffx.28727.1.S1_at11/117+19915361..19915690expressed protein
LOC_Os07g33330Os.16984.2.S1_a_at11/117+19918642..19922640RNA Binding Protein 45, putative, expressed
LOC_Os07g33340Os.24708.1.S1_at11/117+19924412..19930300DEAD/DEAH box helicase family protein, expressed
LOC_Os07g33350Os.49631.2.S1_x_at11/117+19933799..19934729Hsp20/alpha crystallin family protein, expressed
LOC_Os07g33360Os.24533.1.S1_x_at11/117+19936793..19941475chromosoma associate protein subunit H2, putative, expressed
LOC_Os07g33360Os.24533.1.S1_at11/117+19936793..19941475chromosoma associate protein subunit H2, putative, expressed
LOC_Os07g33360Os.46297.1.S1_at11/117+19936793..19941475chromosoma associate protein subunit H2, putative, expressed
LOC_Os07g33370OsAffx.22295.2.S1_at11/117+19942549..19949361IQ calmodulin-binding motif family protein, expressed
LOC_Os07g33370OsAffx.22295.2.S1_x_at11/117+19942549..19949361IQ calmodulin-binding motif family protein, expressed
LOC_Os07g33370OsAffx.22295.1.S1_at7/117+19942549..19949361IQ calmodulin-binding motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008026molecular_functionATP-dependent helicase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24708.1.S1_at--388--2131Chr07:19924789..19924813 (25 bp)
ACAGAGACCAGAGGACTGCCTCCAA
LOC_Os07g33340
Os.24708.1.S1_at--402--1331Chr07:19924756..19924780 (25 bp)
AGAGGTACTTCAACAGCGATGACGA
LOC_Os07g33340
Os.24708.1.S1_at--294--7991Chr07:19924701..19924725 (25 bp)
GGATGTTCTCGCTCAACAGGAGGCG
LOC_Os07g33340
Os.24708.1.S1_at--373--4631Chr07:19924679..19924703 (25 bp)
GCGTTGGCCCTGAAGCTTTTGAGTA
LOC_Os07g33340
Os.24708.1.S1_at--561--2971Chr07:19924637..19924661 (25 bp)
AATGGTTTTGTACCGCGTGATGTTA
LOC_Os07g33340
Os.24708.1.S1_at--945--7391Chr07:19924621..19924645 (25 bp)
GTGATGTTAATGTAGGCAGCTCTCT
LOC_Os07g33340
Os.24708.1.S1_at--200--5071Chr07:19924606..19924630 (25 bp)
GCAGCTCTCTGCAACCGGAGAGTGA
LOC_Os07g33340
Os.24708.1.S1_at--51--8851Chr07:19924576..19924600 (25 bp)
TGATCAGTGCTAGTCTAGTTCCCCG
LOC_Os07g33340
Os.24708.1.S1_at--221--6711Chr07:19924559..19924583 (25 bp)
GTTCCCCGGGAGTTGATATATGCAT
LOC_Os07g33340
Os.24708.1.S1_at--1--111Chr07:19924514..19924538 (25 bp)
ATTCTGTCATTCTAGTCGTACGTCG
LOC_Os07g33340
Os.24708.1.S1_at--873--4231Chr07:19924446..19924470 (25 bp)
CCGTTGAGGGTATTGTAATTTCCAT
LOC_Os07g33340
Target Sequence 
ACAGAGACCAGAGGACTGCCTCCAAGGGTAAGAAGAGGTACTTCAACAGCGATGACGAAGAAGGCAGCAAAGATGCGGCG
AAGGATGGGGATGTTCTCGCTCAACAGGAGGCGTTGGCCCTGAAGCTTTTGAGTAAAATGCACAGTTAATTTAATGGTTT
TGTACCGCGTGATGTTAATGTAGGCAGCTCTCTGCAACCGGAGAGTGAAATTTTGATCAGTGCTAGTCTAGTTCCCCGGG
AGTTGATATATGCATAGGATCTGGAAATGTACCAGATTCTGTCATTCTAGTCGTACGTCGAGAATTTTGATGGAAAACAT
GGTGTTACTATATTATGTACTTACCGTTGAGGGTATTGTAATTTCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24708.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis