Browse Element(s) Details


Os.25404.1.A1_at

Description gb:AK107166.1
DB_XREF= gi:32992375
TID=Os.25404.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25404 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-124-F08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-124-F08, full insert sequence.
FL= gb:AK107166.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g388506/11wall-associated kinase-like 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g38790Os.37725.1.A1_s_at11/119+22286696..22291247Zinc finger, C2H2 type family protein, expressed
LOC_Os09g38790Os.8410.1.S1_at11/119+22286696..22291247Zinc finger, C2H2 type family protein, expressed
LOC_Os09g38800OsAffx.30194.2.S1_at11/119+22291930..22295105wall-associated kinase-like 1, putative
LOC_Os09g38800OsAffx.30194.1.S1_x_at1/119+22291930..22295105wall-associated kinase-like 1, putative
LOC_Os09g38814OsAffx.21820.1.S1_at2/119+22298687..22299046NA
LOC_Os09g38814OsAffx.21820.1.S1_x_at1/119+22298687..22299046NA
LOC_Os09g38830OsAffx.18050.1.S1_at11/119+22302503..22309699Protein kinase domain containing protein
LOC_Os09g38830OsAffx.30194.1.S1_x_at1/119+22302503..22309699Protein kinase domain containing protein
LOC_Os09g38830Os.50240.1.S1_at1/119+22302503..22309699Protein kinase domain containing protein
LOC_Os09g38840OsAffx.30194.1.S1_x_at11/119+22311184..22314011wall-associated kinase-like 1, putative, expressed
LOC_Os09g38840OsAffx.30194.2.S1_at1/119+22311184..22314011wall-associated kinase-like 1, putative, expressed
LOC_Os09g38850Os.25404.1.A1_at6/119+22315284..22318271wall-associated kinase-like 1, putative, expressed
LOC_Os09g38860OsAffx.18052.1.S1_at11/119+22318388..22320008hypothetical protein
LOC_Os09g38870OsAffx.6521.1.S1_at11/119+22324708..22327628hypothetical protein
LOC_Os09g38880OsAffx.18053.1.S1_at11/119+22328946..22329182hypothetical protein
LOC_Os09g38890OsAffx.6522.1.S1_at11/119+22331328..22333002hypothetical protein
LOC_Os09g38890Os.49759.1.S1_x_at1/119+22331328..22333002hypothetical protein
LOC_Os09g38900Os.48092.1.A1_at11/119+22333908..22345064transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g38900Os.35344.18.S1_x_at10/119+22333908..22345064transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g38900Os.35344.3.S1_x_at9/119+22333908..22345064transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g38900OsAffx.22940.5.S1_x_at3/119+22333908..22345064transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g38900OsAffx.22940.5.S1_at2/119+22333908..22345064transposon protein, putative, Mutator sub-class, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0009826biological_processunidimensional cell growth
GO:0048527biological_processlateral root development
GO:0005886cellular_componentplasma membrane
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25404.1.A1_at--1031--2131Chr09:22317789..22317813 (25 bp)
ACAGATCGCCTGATGATGAAAGTCT
LOC_Os09g38850
Os.25404.1.A1_at--232--8971Chr09:22317805..22317829 (25 bp)
TGAAAGTCTTGTAACACATTTCACT
LOC_Os09g38850
Os.25404.1.A1_at--709--6031Chr09:22317974..22317998 (25 bp)
GAGATGACACTCGAAAGTGTTCGAT
LOC_Os09g38850
Os.25404.1.A1_at--1106--5831Chr09:22318063..22318087 (25 bp)
GAGCTACCCGGTAAGTGAGGGTACA
LOC_Os09g38850
Os.25404.1.A1_at--338--8731Chr09:22318134..22318158 (25 bp)
TGTCATCAAGGTTTCCCAGATAATG
LOC_Os09g38850
Os.25404.1.A1_at--174--8291Chr09:22318215..22318239 (25 bp)
GGCATATGATATGCATGATTTTCAT
LOC_Os09g38850
Os.25404.1.A1_at--773--6731NONE
GTTCTTCTTATGAATTTGTATCTTC
NONE
Os.25404.1.A1_at--36--6911NONE
GTATCTTCCTACTATATTCTTCCAA
NONE
Os.25404.1.A1_at--1145--2831Chr09:22318303..22318327 (25 bp)
AAGTACATGTCAAATTACCCTCTGT
NONE
Os.25404.1.A1_at--1148--3131Chr09:22318315..22318339 (25 bp)
AATTACCCTCTGTATTCAACTGATA
NONE
Os.25404.1.A1_at--1075--3771Chr09:22318322..22318346 (25 bp)
CTCTGTATTCAACTGATACTGTGAA
NONE
Target Sequence 
ACAGATCGCCTGATGATGAAAGTCTTGTAACACATTTCACTGCCCTACTCACACAAGGNNACTTGGGNGANATACTTGAT
CCTCAGGTCAAGGAAGAGGGAGGCGAAGAAGTTAAAGAGNTAGCTGTGTTAGCTGTGGCATGTGNCAAGCTGAAAGNAGA
GGAGCGGCCTACTATGAGGNAGGTGGAGATGACACTCGAAAGTGTTCGATNGTCATCACNGCAGCAAGAGCATGGTGTGG
GTGCAAAGAAATCNAGGGAGAATCATGTCTCNTGGAGCTACCCGGTAAGTGAGGGTACAAGNACACAATCAACTAGACAA
TATAGCCTNGAAGAAGAGTATTTGNTGTCATCAAGGTTTCCCAGATAATGGATTNNTTTTTCTGGAGTGNNTTTGGATCA
ATAGAAAGAGTTGTCACAATGTACAAGGCATATGATATGCATGATTTTCATANCTAAATGTGCANTGTTTTANTGTTCTT
CTTATGAATTTGTATCTTCCTACTATATTCTTCCAAGTACATGTCAAATTACCCTCTGTATTCAACTGATACTGTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25404.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis