Browse Element(s) Details


Os.26688.1.S3_s_at

Description gb:AK105308.1
DB_XREF= gi:32990517
TID=Os.26688.1
CNT=77
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.26688 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) ribosomal protein L14 (P0557A01.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-117-B12, full insert sequence.
FL= gb:AK071967.1 gb:AK105308.1 gb:AK059459.1 gb:AK058501.1 gb:AK104024.1 gb:AK063122.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5794410/11DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os09g342141/11UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g57890Os.18390.1.S1_a_at11/111+33798748..33805306START domain containing protein, expressed
LOC_Os01g57900Os.32277.1.S1_at11/111+33805833..33808190pentatricopeptide, putative, expressed
LOC_Os01g57910OsAffx.11639.1.S1_at11/111+33808778..33811037YOR3513c, putative
LOC_Os01g57920OsAffx.11640.1.S1_at11/111+33811634..33814672F-box domain containing protein, expressed
LOC_Os01g57930Os.34845.2.S1_x_at11/111+33816133..33819807CDP-alcohol phosphatidyltransferase family protein, expressed
LOC_Os01g57930Os.34845.1.S1_at10/111+33816133..33819807CDP-alcohol phosphatidyltransferase family protein, expressed
LOC_Os01g57940Os.33418.1.S1_at11/111+33821456..33823540Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os01g57940OsAffx.23830.2.S1_at1/111+33821456..33823540Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os01g57944OsAffx.32334.1.S1_x_at11/111+33827640..33830330DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os01g57944Os.26455.2.S1_s_at11/111+33827640..33830330DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os01g57944OsAffx.32335.1.S1_x_at11/111+33827640..33830330DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os01g57944OsAffx.32334.1.S1_s_at11/111+33827640..33830330DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os01g57944OsAffx.32333.1.S1_x_at11/111+33827640..33830330DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os01g57944OsAffx.32331.1.S1_x_at11/111+33827640..33830330DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os01g57944Os.26688.1.S3_s_at10/111+33827640..33830330DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os01g57944OsAffx.32332.1.S1_x_at9/111+33827640..33830330DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os01g57944Os.26455.1.S1_at2/111+33827640..33830330DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os01g57950OsAffx.32337.1.S1_x_at11/111+33830617..3383146050S ribosomal protein L14, putative
LOC_Os01g57950Os.26688.1.S2_s_at10/111+33830617..3383146050S ribosomal protein L14, putative
LOC_Os01g57960OsAffx.2355.1.S1_at1/111+33833519..33835701retrotransposon protein, putative, unclassified, expressed
LOC_Os01g57974OsAffx.32214.1.S1_x_at11/111+33851621..33862024retrotransposon protein, putative, unclassified
LOC_Os01g57974OsAffx.26050.2.S2_x_at11/111+33851621..33862024retrotransposon protein, putative, unclassified
LOC_Os01g57974OsAffx.32225.1.S1_x_at8/111+33851621..33862024retrotransposon protein, putative, unclassified
LOC_Os01g57974OsAffx.32225.1.S1_at8/111+33851621..33862024retrotransposon protein, putative, unclassified
LOC_Os01g57974OsAffx.23039.1.S1_x_at1/111+33851621..33862024retrotransposon protein, putative, unclassified
LOC_Os01g57974OsAffx.2020.1.S1_at1/111+33851621..33862024retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26688.1.S3_s_at--1082--69310Chr09:11949587..11949611 (25 bp)
GTAGTATCTACAAATATTACCGAAA
NONE
Os.26688.1.S3_s_at--1048--103510Chr09:20197664..20197684 (21 bp)
TTTTAAAGCGTATCAGCCGACCTGG
LOC_Os09g34214
Os.26688.1.S3_s_at--738--1679Chr09:11949764..11949788 (25 bp)
AGCCGACCTGGCTTACGAATTTATG
NONE
Os.26688.1.S3_s_at--29--4899Chr09:11949774..11949798 (25 bp)
GCTTACGAATTTATGCCAACTATCA
NONE
Os.26688.1.S3_s_at--46--5910Chr09:11949786..11949810 (25 bp)
ATGCCAACTATCAAGGAATTCCTAA
NONE
Os.26688.1.S3_s_at--352--102310Chr09:11949814..11949838 (25 bp)
TTTGGGCGGAATGGGAATTGCTATT
NONE
Os.26688.1.S3_s_at--423--86511Chr09:11949825..11949849 (25 bp)
TGGGAATTGCTATTCTTTCTACTTC
NONE
Os.26688.1.S3_s_at--678--1111Chr09:11949836..11949860 (25 bp)
ATTCTTTCTACTTCTCGAGGTATAA
NONE
Os.26688.1.S3_s_at--9--37311Chr09:11949843..11949867 (25 bp)
CTACTTCTCGAGGTATAATGACAGA
NONE
Os.26688.1.S3_s_at--541--6899Chr08:9260284..9260308 (25 bp)
GTATAATGACAGATCGAGAAGCTCG
NONE
Os.26688.1.S3_s_at--227--5979Chr09:11949871..11949894 (24 bp)
GAGAAGCTCGACTAAACAGAATTGG
NONE
Target Sequence 
GTAGTATCTACAAATATTACCGAAAACATTGTTAAAATACTTCTACGAGAGGGTTTTATTGAAAGTGTTCGGAAACATCA
GGAAAGTAACAGATATTTCTTGGTTTTAACTTTGCGACATCANAAAGAGAAAGACTAGAAAGGGAATATATAGAACTAGA
ACCTTTTTAAAGCGTATCAGCCGACCTGGCTTACGAATTTATGCCAACTATCAAGGAATTCCTAAGGTTTTGGGCGGAAT
GGGAATTGCTATTCTTTCTACTTCTCGAGGTATAATGACAGATCGAGAAGCTCGACTAAACAGAATTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26688.1.S3_s_at     

Putative homologies in rice

Putative homologies in arabidopsis