Browse Element(s) Details


Os.28427.2.S1_x_at

Description gb:AK106094.1
DB_XREF= gi:32991303
TID=Os.28427.2
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.28427 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-305-D06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-207-B11, full insert sequence.
FL= gb:AK106094.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1264011/11BURP domain containing protein, expressed
LOC_Os05g124002/11BURP domain containing protein, expressed
LOC_Os05g124102/11BURP domain containing protein, expressed
LOC_Os05g126301/11expressed protein
LOC_Os05g134901/11BURP domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g12600OsAffx.14664.1.S1_at11/115+7211239..7212524hypothetical protein
LOC_Os05g12610NANA5+7218180..7219734retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g12620OsAffx.11392.2.S1_x_at9/115+7222116..7226145retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g12620OsAffx.11392.3.S1_at2/115+7222116..7226145retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g12620OsAffx.11392.1.S1_at1/115+7222116..7226145retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g12620OsAffx.11392.4.S1_s_at1/115+7222116..7226145retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g12630Os.17916.1.S1_at11/115+7229295..7230696expressed protein
LOC_Os05g12630Os.28427.2.S1_x_at1/115+7229295..7230696expressed protein
LOC_Os05g12630OsAffx.26865.1.S1_x_at1/115+7229295..7230696expressed protein
LOC_Os05g12640Os.28427.2.S1_x_at11/115+7234825..7236565BURP domain containing protein, expressed
LOC_Os05g12640Os.28427.1.S2_a_at11/115+7234825..7236565BURP domain containing protein, expressed
LOC_Os05g12640Os.28427.1.S1_x_at11/115+7234825..7236565BURP domain containing protein, expressed
LOC_Os05g12640Os.49997.1.S1_at1/115+7234825..7236565BURP domain containing protein, expressed
LOC_Os05g12650Os.15412.1.S1_x_at11/115+7240951..7244299transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g12650OsAffx.26327.1.S1_at11/115+7240951..7244299transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g12650OsAffx.26327.1.S1_s_at11/115+7240951..7244299transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g12660OsAffx.4317.1.S1_at11/115+7248584..7248835hypothetical protein
LOC_Os05g12670Os.20334.1.S1_at10/115+7251019..7251893expressed protein
LOC_Os05g12670Os.50573.1.S1_at1/115+7251019..7251893expressed protein
LOC_Os05g12680Os.26382.1.S1_at11/115+7258649..7262679Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009269biological_processresponse to desiccation
GO:0009651biological_processresponse to salt stress
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0004650molecular_functionpolygalacturonase activity
GO:0045735molecular_functionnutrient reservoir activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28427.2.S1_x_at--327--3954Chr05:7235984..7236008 (25 bp)
CGTACAGGGTGGAGGCCGTGAGGCC
LOC_Os05g12640
Os.28427.2.S1_x_at--894--572Chr05:7236049..7236073 (25 bp)
ATGCCCTACGCGTACGCCGTGTTCG
LOC_Os05g12640
Os.28427.2.S1_x_at--220--9031Chr05:7236077..7236101 (25 bp)
TGCACGGGATCAAGGGCGCGGCGTA
LOC_Os05g12640
Os.28427.2.S1_x_at--1050--1072Chr05:7236089..7236113 (25 bp)
AGGGCGCGGCGTACACGGTGACGCT
LOC_Os05g12640
Os.28427.2.S1_x_at--131--4211Chr05:7236122..7236146 (25 bp)
CCGACGGGACCATGGCGGAGGCGGT
LOC_Os05g12640
Os.28427.2.S1_x_at--125--4271Chr05:7236349..7236373 (25 bp)
CCGGCTGGCTATCATGTTATCATCG
LOC_Os05g12640
Os.28427.2.S1_x_at--380--8312Chr05:7236355..7236379 (25 bp)
GGCTATCATGTTATCATCGCGTGTG
LOC_Os05g12640
Os.28427.2.S1_x_at--658--9611Chr05:7236360..7236384 (25 bp)
TCATGTTATCATCGCGTGTGTGTGC
LOC_Os05g12640
Os.28427.2.S1_x_at--770--411Chr05:7236367..7236391 (25 bp)
ATCATCGCGTGTGTGTGCGCGCCGA
LOC_Os05g12640
Os.28427.2.S1_x_at--111--2276Chr11:7243043..7243062 (20 bp)
AAATCAACTTCTACCTTCTTGGCTA
NONE
Os.28427.2.S1_x_at--789--3252Chr05:7236542..7236565 (24 bp)
CAACTTCTACCTTCTTGGCTACCAA
LOC_Os05g12640
Target Sequence 
CGTACAGGGTGGAGGCCGTGAGGCCCGTGCCGGTGCCCGGGGGCGANATGGTGGNATGCCACAGGATGCCCTACGCGTAC
GCCGTGTTCGGGGTGCACGGGATCAAGGGCGCGGCGTACACGGTGACGCTGGCCGGCGCCGACGGGACCATGGCGGAGGC
GGTGGCGGCGTGCCACGGGGACGTGGACGGGCACGGCGTGGCGGTGNCGNAGNCGTACAAGAGGCTCGGCNTGGCNCCCG
GNAAGGTGGNAGTCTGCNACTTCCTGCCTNAGGACGACATGCTCTGGGTGCGCAACTGAATGAAGCAGCTACCTGCGCGC
CATCCATGGCTAATTAAGCTCCTTCCTATATTTTCGATCTACCTGCCGGCTGGCTATCATGTTATCATCGCGTGTGTGTG
CGCGCCGATCCGACATGCCCACACTACACGTCGACACTACACGTGTTTTATTTTGTTAATTAATAAGTCTGGACAACCAG
GTCATCTTGTACGGCACTTCTCCCCTCTGTCCCGAAATAAACCAACTTATAAAGATTGAAGTTTGTCGCAAAATAAATCA
ACTTCTACCTTCTTGGCTACCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28427.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis