Browse Element(s) Details


Os.32105.1.S1_at

Description gb:AK106014.1
DB_XREF= gi:32991223
TID=Os.32105.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32105 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative receptor-like kinase Xa21-binding protein 3 (P0459B04.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-206-B05, full insert sequence.
FL= gb:AK106014.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7432011/11ankyrin repeat family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g74280Os.27390.1.S1_a_at11/111+43366832..43370797mce-related family protein, putative, expressed
LOC_Os01g74280Os.27899.1.A1_x_at1/111+43366832..43370797mce-related family protein, putative, expressed
LOC_Os01g74300Os.12410.3.S1_s_at11/111+43374103..43374519Metallothionein family protein, expressed
LOC_Os01g74300Os.12410.2.S1_at11/111+43374103..43374519Metallothionein family protein, expressed
LOC_Os01g74300Os.12410.3.S1_x_at5/111+43374103..43374519Metallothionein family protein, expressed
LOC_Os01g74300Os.12410.1.S1_x_at2/111+43374103..43374519Metallothionein family protein, expressed
LOC_Os01g74300Os.12410.1.S1_a_at1/111+43374103..43374519Metallothionein family protein, expressed
LOC_Os01g74310OsAffx.24039.2.S1_x_at11/111+43376010..43385697expressed protein
LOC_Os01g74310OsAffx.24039.1.S1_at11/111+43376010..43385697expressed protein
LOC_Os01g74310Os.26657.1.A1_at11/111+43376010..43385697expressed protein
LOC_Os01g74310Os.42948.1.S1_x_at11/111+43376010..43385697expressed protein
LOC_Os01g74310Os.26657.1.A1_s_at11/111+43376010..43385697expressed protein
LOC_Os01g74320Os.32105.1.S1_at11/111+43390588..43392280ankyrin repeat family protein, putative, expressed
LOC_Os01g74330Os.27785.1.A1_at11/111+43393540..43397014pectinacetylesterase family protein, putative, expressed
LOC_Os01g74330Os.39098.1.S1_x_at10/111+43393540..43397014pectinacetylesterase family protein, putative, expressed
LOC_Os01g74330Os.39098.1.S1_at9/111+43393540..43397014pectinacetylesterase family protein, putative, expressed
LOC_Os01g74340OsAffx.24040.1.S1_s_at11/111+43397835..43399098RNA recognition motif family protein
LOC_Os01g74340Os.21875.1.S1_at3/111+43397835..43399098RNA recognition motif family protein
LOC_Os01g74350OsAffx.11847.1.S1_at11/111+43399629..43401621Soluble inorganic pyrophosphatase, putative, expressed
LOC_Os01g74360Os.45884.1.S1_x_at3/111+43404201..4340450226S proteasome non-ATPase regulatory subunit 6, putative, expressed
LOC_Os01g74370Os.32602.1.S1_at10/111+43405650..43407248expressed protein
LOC_Os01g74370Os.32602.2.S1_x_at10/111+43405650..43407248expressed protein
LOC_Os01g74380OsAffx.22940.1.S1_s_at9/111+43408845..43409881hypothetical protein
LOC_Os01g74380OsAffx.22940.3.S1_x_at5/111+43408845..43409881hypothetical protein
LOC_Os01g74380OsAffx.22940.2.S1_at5/111+43408845..43409881hypothetical protein
LOC_Os01g74380OsAffx.22940.2.S1_s_at3/111+43408845..43409881hypothetical protein
LOC_Os01g74380OsAffx.22940.5.S1_at3/111+43408845..43409881hypothetical protein
LOC_Os01g74380OsAffx.22940.5.S1_x_at3/111+43408845..43409881hypothetical protein
LOC_Os01g74380OsAffx.31552.2.S1_at1/111+43408845..43409881hypothetical protein
LOC_Os01g74390Os.35344.18.S1_x_at5/111+43413021..43416776retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g74390Os.35344.3.S1_x_at3/111+43413021..43416776retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g74390OsAffx.22940.5.S1_x_at1/111+43413021..43416776retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32105.1.S1_at--632--7171Chr01:43391927..43391951 (25 bp)
GTCGTTTTCCAGGATAGGCCGCGGC
LOC_Os01g74320
Os.32105.1.S1_at--93--4531Chr01:43392030..43392054 (25 bp)
GCCGCTGCTGCTATTTGTGACACAT
LOC_Os01g74320
Os.32105.1.S1_at--119--10211Chr01:43392041..43392065 (25 bp)
TATTTGTGACACATGACCCTCCCTC
LOC_Os01g74320
Os.32105.1.S1_at--944--9311Chr01:43392060..43392084 (25 bp)
TCCCTCTATTCATTTTTTGTGCAGT
LOC_Os01g74320
Os.32105.1.S1_at--528--5031Chr01:43392080..43392104 (25 bp)
GCAGTTACACCTTACTAGCACTAGA
LOC_Os01g74320
Os.32105.1.S1_at--829--1491Chr01:43392096..43392120 (25 bp)
AGCACTAGAGCTTTGGGTAATCAAT
LOC_Os01g74320
Os.32105.1.S1_at--128--7831Chr01:43392111..43392135 (25 bp)
GGTAATCAATCAATCCTCCCACAAG
LOC_Os01g74320
Os.32105.1.S1_at--980--1571Chr01:43392134..43392158 (25 bp)
AGCTCAAGCTAGGTTATTCATTATA
LOC_Os01g74320
Os.32105.1.S1_at--422--7931Chr01:43392185..43392209 (25 bp)
GGATTGCATTTGTATTGTCTTGTGT
LOC_Os01g74320
Os.32105.1.S1_at--108--10791Chr01:43392199..43392223 (25 bp)
TTGTCTTGTGTTGCATTCAATTTGT
LOC_Os01g74320
Os.32105.1.S1_at--755--231Chr01:43392227..43392251 (25 bp)
ATATACTTGTTTTTGGCTTGTCATG
LOC_Os01g74320
Target Sequence 
GTCGTTTTCCAGGATAGGCCGCGGCTCCGGGAGATTGGTGGTGGACGGCAGCAGCGTAGGAGAGCTCGCCGACAAGCCTG
ACCACGACTTCTCTTCTGTCGCCGCCGCTGCTGCTATTTGTGACACATGACCCTCCCTCTATTCATTTTTTGTGCAGTTA
CACCTTACTAGCACTAGAGCTTTGGGTAATCAATCAATCCTCCCACAAGCTCAAGCTAGGTTATTCATTATAGCAAACAG
GAATTGGATATTGGGATTGGATTGCATTTGTATTGTCTTGTGTTGCATTCAATTTGTAGTATATACTTGTTTTTGGCTTG
TCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32105.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis