Browse Element(s) Details


Os.33311.2.S1_at

Description gb:AK101020.1
DB_XREF= gi:32986229
TID=Os.33311.2
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33311 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023149K08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023149K08, full insert sequence.
FL= gb:AK101020.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0209011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g02020Os.7443.1.S1_s_at11/113+615070..617856expressed protein
LOC_Os03g02030Os.9990.1.S1_at11/113+618942..623961FolC bifunctional protein, expressed
LOC_Os03g02040Os.8597.1.S1_at11/113+625299..627814Remorin, C-terminal region family protein, expressed
LOC_Os03g02050Os.2239.1.S1_at10/113+630546..631143Nonspecific lipid-transfer protein 2, putative, expressed
LOC_Os03g02060OsAffx.12706.1.S1_at11/113+631544..632723hypothetical protein
LOC_Os03g02070Os.22967.1.S1_s_at11/113+634813..636130heavy-metal-associated domain-containing protein, putative, expressed
LOC_Os03g02070Os.15352.1.S1_at1/113+634813..636130heavy-metal-associated domain-containing protein, putative, expressed
LOC_Os03g02080Os.24021.1.S1_x_at11/113+636965..639830expressed protein
LOC_Os03g02080Os.49121.1.A1_at11/113+636965..639830expressed protein
LOC_Os03g02090Os.33311.2.S1_at11/113+640631..645102expressed protein
LOC_Os03g02100Os.33311.1.S1_at5/113+645214..652178Valyl-tRNA synthetase, putative, expressed
LOC_Os03g02100Os.9138.1.S1_at1/113+645214..652178Valyl-tRNA synthetase, putative, expressed
LOC_Os03g02110Os.24954.1.A1_s_at11/113+653032..660226expressed protein
LOC_Os03g02110Os.50528.1.S1_at11/113+653032..660226expressed protein
LOC_Os03g02120NANA3+661125..665059transposon protein, putative, Mariner sub-class
LOC_Os03g02130Os.38395.3.S1_x_at8/113+666915..668224hypothetical protein
LOC_Os03g02130Os.38395.2.S1_x_at6/113+666915..668224hypothetical protein
LOC_Os03g02130Os.38395.1.S1_at6/113+666915..668224hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33311.2.S1_at--114--6831Chr03:642542..642566 (25 bp)
GTTTCACACAGACGCCGTGGGTGAC
LOC_Os03g02090
Os.33311.2.S1_at--147--1831Chr03:642531..642555 (25 bp)
ACGCCGTGGGTGACAATGAGCCCGA
LOC_Os03g02090
Os.33311.2.S1_at--1149--10091Chr03:641114..641138 (25 bp)
TATGGTGAAGATGCTGATCGGCGAC
LOC_Os03g02090
Os.33311.2.S1_at--142--6411Chr03:641099..641123 (25 bp)
GATCGGCGACTAAGCATGAGGGCAA
LOC_Os03g02090
Os.33311.2.S1_at--817--10211Chr03:641054..641078 (25 bp)
TATTGTTTTGCATGTGCTGCTGAAA
LOC_Os03g02090
Os.33311.2.S1_at--841--4751Chr03:641039..641063 (25 bp)
GCTGCTGAAATGTTGCATCCCATCA
LOC_Os03g02090
Os.33311.2.S1_at--295--6671Chr03:641028..641052 (25 bp)
GTTGCATCCCATCAATGGCTTTGAT
LOC_Os03g02090
Os.33311.2.S1_at--902--7491Chr03:641002..641026 (25 bp)
GTGGTTATGCTGGTATGAGCGTAAC
LOC_Os03g02090
Os.33311.2.S1_at--464--8191Chr03:640903..640927 (25 bp)
GGAAGAGTGTAACACCTGCGCACCC
LOC_Os03g02090
Os.33311.2.S1_at--84--5371Chr03:640827..640851 (25 bp)
GAAGAAATACGCTTTCAGCTTTAGA
LOC_Os03g02090
Os.33311.2.S1_at--776--2611Chr03:640735..640759 (25 bp)
AACCCCGTGATACTATATCTGTTCG
LOC_Os03g02090
Target Sequence 
GTTTCACACAGACGCCGTGGGTGACAATGAGCCCGATGANTGGGGCTTANTCTTNCATGCAAACTGTTAAGAAAGAATTA
TCAAGNTGNCCTATATGGTGAAGATGCTGATCGGCGACTAAGCATGAGGGCAAATAAGAGGAAGAAATCTATTTATTGTT
TTGCATGTGCTGCTGAAATGTTGCATCCCATCAATGGCTTTGATGGTGGTTATGCTGGTATGAGCGTAACCAGGGGCGTG
GGTGCTGGGGACTCTCAAGCAGGAGGAGGAGAGAGGAGGAGAAGTGANAGGAGANAAGTGAGGGGGAAGAGTGTAACACC
TGCGCACCCACTGACTGAACCAGAGGAGTNGNAGCAGAGTAAAACAGAGCAAGGCGGCAAGAAGAAATACGCTTTCAGCT
TTAGAAAACATAATATGTTTAGATGAATGACTTGTGGGGCTAGAGGCCAGCTGTATGGCGAGGGAGGTTAAAAACCCCGT
GATACTATATCTGTTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33311.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis