Browse Element(s) Details


Os.37152.1.S1_at

Description gb:AK060424.1
DB_XREF= gi:32970442
TID=Os.37152.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.37152 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0083M16.13 (OSJNBa0083M16.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-010-H04, full insert sequence.
FL= gb:AK060424.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0417011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g04130Os.35230.1.S1_at9/111+1809784..1814403peptidyl-tRNA hydrolase family protein, expressed
LOC_Os01g04130OsAffx.1926.1.S1_at9/111+1809784..1814403peptidyl-tRNA hydrolase family protein, expressed
LOC_Os01g04140Os.45976.1.S1_x_at4/111+1816330..1819318transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g04140Os.45976.1.S1_at2/111+1816330..1819318transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g04150Os.46306.1.S1_x_at6/111+1822238..1826175transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g04160Os.29823.2.S1_x_at11/111+1830912..1834213expressed protein
LOC_Os01g04160Os.29823.3.S1_at11/111+1830912..1834213expressed protein
LOC_Os01g04160Os.29823.1.S1_at11/111+1830912..1834213expressed protein
LOC_Os01g04170Os.37152.1.S1_at11/111+1834975..1835996expressed protein
LOC_Os01g04180OsAffx.23106.1.S1_at10/111+1836254..1838536hypothetical protein
LOC_Os01g04190Os.6624.1.S1_s_at11/111+1840680..1845906hexose transporter, putative, expressed
LOC_Os01g04190Os.45939.1.S1_x_at9/111+1840680..1845906hexose transporter, putative, expressed
LOC_Os01g04190Os.45939.1.S1_at7/111+1840680..1845906hexose transporter, putative, expressed
LOC_Os01g04190Os.35731.2.S1_x_at5/111+1840680..1845906hexose transporter, putative, expressed
LOC_Os01g04200Os.25441.1.S1_a_at10/111+1846639..1853053metallo-beta-lactamase superfamily protein, expressed
LOC_Os01g04210OsAffx.1927.1.S1_at11/111+1853906..1855254hypothetical protein
LOC_Os01g04210Os.32122.1.S1_x_at1/111+1853906..1855254hypothetical protein
LOC_Os01g04210OsAffx.10902.1.S1_x_at1/111+1853906..1855254hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37152.1.S1_at--299--7171Chr01:1835310..1835334 (25 bp)
GTCTCCTCTGAATCGAGCCATCCAG
LOC_Os01g04170
Os.37152.1.S1_at--542--10631Chr01:1835254..1835278 (25 bp)
TTCGCTGCGTTGGATCGCTTCACTG
LOC_Os01g04170
Os.37152.1.S1_at--1122--31Chr01:1835194..1835218 (25 bp)
ATTGTCGCTATCTTAGCTGCAGCTT
LOC_Os01g04170
Os.37152.1.S1_at--871--10731Chr01:1835148..1835172 (25 bp)
TTGCATCGTTTTACCGTTGCTGCTG
LOC_Os01g04170
Os.37152.1.S1_at--995--4231Chr01:1835135..1835159 (25 bp)
CCGTTGCTGCTGTATCTGTTTATCA
LOC_Os01g04170
Os.37152.1.S1_at--827--1431Chr01:1835100..1835124 (25 bp)
AGAACTTTCTTTTCCCTGCTTCAAT
LOC_Os01g04170
Os.37152.1.S1_at--465--3151Chr01:1835078..1835102 (25 bp)
AATTCAGTCTTTACATTTCCATGTG
LOC_Os01g04170
Os.37152.1.S1_at--959--4311Chr01:1835060..1835084 (25 bp)
CCATGTGTTTTGTGTACTACCCTTG
LOC_Os01g04170
Os.37152.1.S1_at--375--4931Chr01:1835031..1835055 (25 bp)
GCTTGAATATTTGTCCTGTGCTATC
LOC_Os01g04170
Os.37152.1.S1_at--943--3871Chr01:1835016..1835040 (25 bp)
CTGTGCTATCTTTCTTTTTACTCTG
LOC_Os01g04170
Os.37152.1.S1_at--1105--8231Chr01:1834989..1835013 (25 bp)
GGCACATTCAGTAATACCATGGTTT
LOC_Os01g04170
Target Sequence 
GTCTCCTCTGAATCGAGCCATCCAGCTCNNNNNTGCTCTGCTCAATGGCCTCTGCTCTGCCTTCGCTGCGTTGGATCGCT
TCACTGCCTCTTCTGCTGCCGTAGCTTCTNGGTAGGATTAAATTGTCGCTATCTTAGCTGCAGCTTCTTCATGTTCTTGT
TACTTCNTTGCATCGTTTTACCGTTGCTGCTGTATCTGTTTATCAGTCTGTGGGGAGAACTTTCTTTTCCCTGCTTCAAT
TCAGTCTTTACATTTCCATGTGTTTTGTGTACTACCCTTGTTGAGCTTGAATATTTGTCCTGTGCTATCTTTCTTTTTAC
TCTGATGGCACATTCAGTAATACCATGGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37152.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis