Browse Element(s) Details


Os.39243.1.A1_x_at

Description gb:CF290863
DB_XREF= gi:33659896
DB_XREF=14ROOT--01-B01.g1
CLONE=14ROOT--01-B01
TID=Os.39243.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.39243 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g292002/11Glutathione S-transferase, N-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g29150NANA9+17728236..17728895hypothetical protein
LOC_Os09g29160Os.54056.1.S1_at11/119+17730573..17732251expressed protein
LOC_Os09g29170Os.18351.2.S1_at11/119+17733588..17737427Protein kinase domain containing protein, expressed
LOC_Os09g29170Os.18351.1.S1_at11/119+17733588..17737427Protein kinase domain containing protein, expressed
LOC_Os09g29170Os.18351.2.S1_x_at9/119+17733588..17737427Protein kinase domain containing protein, expressed
LOC_Os09g29180Os.41695.2.S1_x_at7/119+17739943..17741068hypothetical protein
LOC_Os09g29180Os.41695.3.S1_x_at7/119+17739943..17741068hypothetical protein
LOC_Os09g29180Os.41695.5.S1_x_at3/119+17739943..17741068hypothetical protein
LOC_Os09g29180Os.41695.4.S1_x_at1/119+17739943..17741068hypothetical protein
LOC_Os09g29190Os.9119.1.S1_at11/119+17741621..17745504Phosphoribosylaminoimidazole-succinocarboxamide synthase, chloroplast precursor, putative, expressed
LOC_Os09g29200Os.11962.1.S1_at11/119+17746186..17747739Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os09g29200Os.39243.1.A1_x_at2/119+17746186..17747739Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os09g29210Os.11962.2.A1_at11/119+17747183..17750262purine permease, putative, expressed
LOC_Os09g29210OsAffx.30073.1.S1_at10/119+17747183..17750262purine permease, putative, expressed
LOC_Os09g29210Os.11962.3.S1_x_at9/119+17747183..17750262purine permease, putative, expressed
LOC_Os09g29239Os.18356.2.S1_at11/119+17754699..17770402purine permease, putative, expressed
LOC_Os09g29239OsAffx.6436.1.S1_at11/119+17754699..17770402purine permease, putative, expressed
LOC_Os09g29239Os.18356.1.S1_x_at11/119+17754699..17770402purine permease, putative, expressed
LOC_Os09g29239OsAffx.1746.1.S1_at2/119+17754699..17770402purine permease, putative, expressed
LOC_Os09g29239Os.32889.2.S1_at1/119+17754699..17770402purine permease, putative, expressed
LOC_Os09g29239Os.10219.1.S1_at1/119+17754699..17770402purine permease, putative, expressed
LOC_Os09g29270Os.51207.1.S1_s_at11/119+17772463..17773353expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009407biological_processtoxin catabolism
GO:0005737cellular_componentcytoplasm
GO:0004364molecular_functionglutathione transferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.39243.1.A1_x_at--8--9291NONE
TCCCCCCGAGGGACAAGCTTGTCGC
NONE
Os.39243.1.A1_x_at--881--1531NONE
AGCTTGTCGCGCTCAACAAGGCTCC
NONE
Os.39243.1.A1_x_at--804--4931NONE
GCTTGTCGCGCTCAACAAGGCTCCC
NONE
Os.39243.1.A1_x_at--944--10811NONE
TTGTCGCGCTCAACAAGGCTCCCCG
NONE
Os.39243.1.A1_x_at--823--8711NONE
TGTCGCGCTCAACAAGGCTCCCCGT
NONE
Os.39243.1.A1_x_at--928--3191NONE
CAAGGCTCCCCGTGAGCAGATCCTT
NONE
Os.39243.1.A1_x_at--885--6931Chr09:17747458..17747482 (25 bp)
GTAGAGAGCACGGTCACTTCAGCTC
LOC_Os09g29200
Os.39243.1.A1_x_at--877--2211NONE
ACAATAAGTTTGTCCCAAGCCCATT
NONE
Os.39243.1.A1_x_at--36--10811NONE
TTGTCCCAAGCCCATTGTGCAAAAG
NONE
Os.39243.1.A1_x_at--877--5391NONE
GAAGCATGATCCGTTTTAAAAAGAC
NONE
Os.39243.1.A1_x_at--96--7711Chr09:17747625..17747645 (21 bp)
GGGGACAATATTGCCTACTTAATTA
LOC_Os09g29200
Target Sequence 
TCCCCCCGAGGGACAAGCTTGTCGCGCTCAACAAGGCTCCCCGTGAGCAGATCCTTTCGGGGTAGAGAGCACGGTCACTT
CAGCTCCCCAGGTAGTACGTTTCATTTCCATGGTCCATGGTTAAACAATAAGTTTGTCCCAAGCCCATTGTGCAAAAGTA
GTAAATGCTCGAAGCATGATCCGTTTTAAAAAGACAAACTTAATGCTTTATGATATGTTATCCAGGGGACAATATTGCCT
ACTTAATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39243.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis