Browse Element(s) Details

Os.4169.1.S1_at

Description

gb:D01000.1
DB_XREF= gi:218225
TID=Os.4169.1
CNT=35
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4169 (NCBI UniGene Cluster)
DEF=Oryza sativa mRNA for copperzinc-superoxide dismutase, complete cds, clone:RSODB.
PROD=copperzinc-superoxide dismutase
FL= gb:D01000.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os07g46990	11/11	Superoxide dismutase 2, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os07g46920	Os.15281.1.S1_x_at	11/11	7	+	28049381..28051737	oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46920	Os.15281.1.S1_at	11/11	7	+	28049381..28051737	oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46920	Os.44598.1.S1_x_at	1/11	7	+	28049381..28051737	oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46930	Os.44598.1.S1_x_at	11/11	7	+	28052133..28054681	oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46940	Os.16866.2.A1_x_at	1/11	7	+	28056141..28057175	NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g46940	OsAffx.22529.1.S1_s_at	1/11	7	+	28056141..28057175	NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g46950	Os.32357.1.S1_x_at	11/11	7	+	28059684..28061571	transposon protein, putative, unclassified, expressed
LOC_Os07g46950	Os.32357.1.S1_at	8/11	7	+	28059684..28061571	transposon protein, putative, unclassified, expressed
LOC_Os07g46950	Os.10002.1.S1_at	7/11	7	+	28059684..28061571	transposon protein, putative, unclassified, expressed
LOC_Os07g46960	NA	NA	7	+	28064437..28065364	hypothetical protein
LOC_Os07g46970	NA	NA	7	+	28067733..28069627	NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g46980	Os.16866.2.A1_x_at	11/11	7	+	28071673..28073174	NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g46980	OsAffx.20394.1.S1_s_at	1/11	7	+	28071673..28073174	NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g46980	Os.32357.1.S1_x_at	1/11	7	+	28071673..28073174	NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g46990	Os.4169.1.S1_at	11/11	7	+	28073855..28075969	Superoxide dismutase 2, putative, expressed
LOC_Os07g47000	Os.45962.1.S1_a_at	2/11	7	+	28076380..28078098	hypothetical protein
LOC_Os07g47010	Os.41695.3.S1_x_at	4/11	7	+	28087056..28091050	SWIM zinc finger family protein
LOC_Os07g47010	Os.41695.2.S1_x_at	3/11	7	+	28087056..28091050	SWIM zinc finger family protein
LOC_Os07g47010	Os.41695.4.S1_x_at	3/11	7	+	28087056..28091050	SWIM zinc finger family protein
LOC_Os07g47010	Os.41695.15.S1_s_at	2/11	7	+	28087056..28091050	SWIM zinc finger family protein
LOC_Os07g47010	Os.41695.5.S1_x_at	2/11	7	+	28087056..28091050	SWIM zinc finger family protein
LOC_Os07g47020	NA	NA	7	+	28091333..28094259	transposon protein, putative, Mutator sub-class
LOC_Os07g47030	Os.45962.1.S1_a_at	11/11	7	+	28099592..28107839	expressed protein

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0006800	biological_process	oxygen and reactive oxygen species metabolism
GO:0006979	biological_process	response to oxidative stress
GO:0009416	biological_process	response to light stimulus
GO:0019430	biological_process	removal of superoxide radicals
GO:0046688	biological_process	response to copper ion
GO:0005737	cellular_component	cytoplasm
GO:0005777	cellular_component	peroxisome
GO:0005829	cellular_component	cytosol
GO:0009507	cellular_component	chloroplast
GO:0004785	molecular_function	copper, zinc superoxide dismutase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.4169.1.S1_at--1056--623	1	Chr07:28075071..28075092 (22 bp)	GATGGTCCGACCTCTGTGACGGGAA	LOC_Os07g46990
Os.4169.1.S1_at--746--265	1	Chr07:28075032..28075056 (25 bp)	AAGCCAGGGCTCCATGGATTCCATG	LOC_Os07g46990
Os.4169.1.S1_at--978--943	1	Chr07:28074998..28075022 (25 bp)	TCGGTGACACCACTAATGGCTGCAT	LOC_Os07g46990
Os.4169.1.S1_at--421--475	1	Chr07:28074892..28075004 (25 bp)	GCTGCATGTCAACTGGACCACACTT	LOC_Os07g46990
Os.4169.1.S1_at--642--585	1	Chr07:28074877..28074901 (25 bp)	GACCACACTTCAATCCTACTGGGAA	LOC_Os07g46990
Os.4169.1.S1_at--348--43	1	Chr07:28074457..28074481 (25 bp)	ATCATTGGCCGAGCTGTTGTTGTCC	LOC_Os07g46990
Os.4169.1.S1_at--1112--123	1	Chr07:28074090..28074250 (25 bp)	AGTTGCTTGCGGAATCATCGGACTC	LOC_Os07g46990
Os.4169.1.S1_at--556--353	1	Chr07:28074075..28074099 (25 bp)	CATCGGACTCCAGGGTTAGACGTCT	LOC_Os07g46990
Os.4169.1.S1_at--323--679	1	Chr07:28074061..28074085 (25 bp)	GTTAGACGTCTCAACTTTCCAACAT	LOC_Os07g46990
Os.4169.1.S1_at--438--145	1	Chr07:28074034..28074058 (25 bp)	AGAAGCTGTTCATGTTCGCTCGTAT	LOC_Os07g46990
Os.4169.1.S1_at--464--1019	1	Chr07:28073947..28073971 (25 bp)	TATATGTGCTATACTCCTGTCCGAA	LOC_Os07g46990

Target Sequence

GATGGTCCGACCTCTGTGACGGGAAGTGTCTCTGGGCTCAAGCCAGGGCTCCATGGATTCCATGTGCACGCGCTCGGTGA
CACCACTAATGGCTGCATGTCAACTGGACCACACTTCAATCCTACTGGGAAGGAACATGGGGCACCACAAGATGAGAACC
GCCATGCCGGTGATCTTGGAAATATAACAGCTGGAGCAGATGGTGTTGCTAATGTCAATGTCTCTGACAGCCAGATCCCC
CTTACTGGAGCACACTCCATCATTGGCCGAGCTGTTGTTGTCCATGCTGATCCTGATGATCTTGGCAAGGGTGGACATGA
GCTTAGCAAGACCACTGGAAATGCTGGGGGCCGAGTTGCTTGCGGAATCATCGGACTCCAGGGTTAGACGTCTCAACTTT
CCAACATACAGAAGCTGTTCATGTTCGCTCGTATGGATGTTGAAATAAAAATAAGCACCTGATGTATGACCAGTGTGCAG
TTTGCCCCAGTTTATATATATGTGCTATACTCCTGTCCGAA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis