Browse Element(s) Details


Os.46592.2.S1_x_at

Description gb:NM_197335.1
DB_XREF= gi:37536029
TID=Os.46592.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46592 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0026L12.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0026L12.12), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g370349/11Cytochrome P450 family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g36960Os.46643.1.S1_x_at11/1110+19474817..19476418transposon protein, putative, unclassified, expressed
LOC_Os10g36960Os.46643.1.S1_at11/1110+19474817..19476418transposon protein, putative, unclassified, expressed
LOC_Os10g36960OsAffx.30695.2.S1_x_at4/1110+19474817..19476418transposon protein, putative, unclassified, expressed
LOC_Os10g36960OsAffx.30695.3.S1_x_at2/1110+19474817..19476418transposon protein, putative, unclassified, expressed
LOC_Os10g36960OsAffx.30695.1.S1_x_at2/1110+19474817..19476418transposon protein, putative, unclassified, expressed
LOC_Os10g36960OsAffx.30695.4.S1_x_at1/1110+19474817..19476418transposon protein, putative, unclassified, expressed
LOC_Os10g36966OsAffx.7975.1.S1_at11/1110+19476908..19478454hypothetical protein
LOC_Os10g36972NANA10+19479494..19479922hypothetical protein
LOC_Os10g36980Os.17865.1.S1_at11/1110+19480575..19482362transposon protein, putative, unclassified, expressed
LOC_Os10g36980OsAffx.30695.2.S1_x_at3/1110+19480575..19482362transposon protein, putative, unclassified, expressed
LOC_Os10g36980OsAffx.30695.4.S1_x_at1/1110+19480575..19482362transposon protein, putative, unclassified, expressed
LOC_Os10g36980Os.46643.1.S1_x_at1/1110+19480575..19482362transposon protein, putative, unclassified, expressed
LOC_Os10g36980OsAffx.30695.3.S1_x_at1/1110+19480575..19482362transposon protein, putative, unclassified, expressed
LOC_Os10g36984NANA10+19482711..19484390hypothetical protein
LOC_Os10g36990Os.35344.3.S1_x_at11/1110+19485516..19491690transposon protein, putative, Mutator sub-class
LOC_Os10g36990Os.35344.18.S1_x_at10/1110+19485516..19491690transposon protein, putative, Mutator sub-class
LOC_Os10g36990OsAffx.22940.5.S1_x_at2/1110+19485516..19491690transposon protein, putative, Mutator sub-class
LOC_Os10g37010OsAffx.13460.1.S1_at2/1110+19493697..19495523hypothetical protein
LOC_Os10g37020OsAffx.30695.4.S1_at10/1110+19497148..19498572transposon protein, putative, unclassified
LOC_Os10g37020OsAffx.30695.4.S1_x_at8/1110+19497148..19498572transposon protein, putative, unclassified
LOC_Os10g37020OsAffx.30695.2.S1_x_at3/1110+19497148..19498572transposon protein, putative, unclassified
LOC_Os10g37020OsAffx.30695.3.S1_x_at1/1110+19497148..19498572transposon protein, putative, unclassified
LOC_Os10g37020Os.46643.1.S1_x_at1/1110+19497148..19498572transposon protein, putative, unclassified
LOC_Os10g37034Os.46592.1.S1_at11/1110+19499596..19503060Cytochrome P450 family protein
LOC_Os10g37034Os.46592.2.S1_x_at9/1110+19499596..19503060Cytochrome P450 family protein
LOC_Os10g37034OsAffx.30695.2.S1_x_at5/1110+19499596..19503060Cytochrome P450 family protein
LOC_Os10g37034OsAffx.30695.4.S1_x_at5/1110+19499596..19503060Cytochrome P450 family protein
LOC_Os10g37034OsAffx.30695.4.S1_at4/1110+19499596..19503060Cytochrome P450 family protein
LOC_Os10g37034OsAffx.30695.3.S1_x_at2/1110+19499596..19503060Cytochrome P450 family protein
LOC_Os10g37034Os.46643.1.S1_x_at2/1110+19499596..19503060Cytochrome P450 family protein
LOC_Os10g37034OsAffx.30695.1.S1_x_at1/1110+19499596..19503060Cytochrome P450 family protein
LOC_Os10g37034Os.51397.1.S1_at1/1110+19499596..19503060Cytochrome P450 family protein
LOC_Os10g37050OsAffx.30695.2.S1_x_at11/1110+19508153..19509737transposon protein, putative, unclassified, expressed
LOC_Os10g37050OsAffx.30695.2.S1_at11/1110+19508153..19509737transposon protein, putative, unclassified, expressed
LOC_Os10g37050Os.46643.1.S1_x_at3/1110+19508153..19509737transposon protein, putative, unclassified, expressed
LOC_Os10g37050OsAffx.30695.4.S1_x_at2/1110+19508153..19509737transposon protein, putative, unclassified, expressed
LOC_Os10g37050OsAffx.30695.3.S1_x_at2/1110+19508153..19509737transposon protein, putative, unclassified, expressed
LOC_Os10g37050OsAffx.30695.1.S1_x_at1/1110+19508153..19509737transposon protein, putative, unclassified, expressed
LOC_Os10g37060Os.46503.1.S1_at11/1110+19510933..19512780T-complex protein 1, delta subunit, putative, expressed
LOC_Os10g37070OsAffx.30695.1.S1_x_at11/1110+19517847..19519115Cytochrome P450 family protein
LOC_Os10g37070OsAffx.30695.1.S1_at11/1110+19517847..19519115Cytochrome P450 family protein
LOC_Os10g37070OsAffx.30695.3.S1_x_at6/1110+19517847..19519115Cytochrome P450 family protein
LOC_Os10g37070OsAffx.30695.4.S1_x_at1/1110+19517847..19519115Cytochrome P450 family protein
LOC_Os10g37070OsAffx.30695.2.S1_x_at1/1110+19517847..19519115Cytochrome P450 family protein
LOC_Os10g37070OsAffx.30725.2.S1_x_at1/1110+19517847..19519115Cytochrome P450 family protein
LOC_Os10g37070Os.46643.1.S1_x_at1/1110+19517847..19519115Cytochrome P450 family protein
LOC_Os10g37079NANA10+19522165..19522383hypothetical protein
LOC_Os10g37090Os.18362.1.S1_at8/1110+19524163..19526198expressed protein
LOC_Os10g37100OsAffx.30695.3.S1_x_at11/1110+19526960..19528498Cytochrome P450 family protein
LOC_Os10g37100OsAffx.30695.1.S1_x_at4/1110+19526960..19528498Cytochrome P450 family protein
LOC_Os10g37100OsAffx.30695.2.S1_x_at2/1110+19526960..19528498Cytochrome P450 family protein
LOC_Os10g37100OsAffx.30695.4.S1_x_at2/1110+19526960..19528498Cytochrome P450 family protein
LOC_Os10g37100Os.46643.1.S1_x_at1/1110+19526960..19528498Cytochrome P450 family protein

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46592.2.S1_x_at--179--8471Chr10:19499428..19499452 (25 bp)
TGGCCGCCTTGTGGAGTCCCGTCGT
NONE
Os.46592.2.S1_x_at--499--4171Chr10:19499592..19499616 (25 bp)
CGCCATGACCAACGAGCAACGAGTG
NONE
Os.46592.2.S1_x_at--839--3251Chr10:19499601..19499625 (25 bp)
CAACGAGCAACGAGTGGTCGAGTGC
LOC_Os10g37034
Os.46592.2.S1_x_at--226--1851Chr10:19499665..19499689 (25 bp)
ACGCACGCCGTTTCTGCTGGGAGAA
LOC_Os10g37034
Os.46592.2.S1_x_at--392--10591Chr10:19499676..19499700 (25 bp)
TTCTGCTGGGAGAAACGCCGCCGCT
LOC_Os10g37034
Os.46592.2.S1_x_at--1096--4551Chr10:19499709..19499733 (25 bp)
GCGCGCCTGCCGTGACCGAGGAATT
LOC_Os10g37034
Os.46592.2.S1_x_at--463--8371Chr10:19499738..19499762 (25 bp)
GGCGAGGTGGCACAGCTTCACTTAC
LOC_Os10g37034
Os.46592.2.S1_x_at--565--7531Chr10:19499744..19499768 (25 bp)
GTGGCACAGCTTCACTTACATGTGA
LOC_Os10g37034
Os.46592.2.S1_x_at--262--10472Chr10:19499759..19499783 (25 bp)
TTACATGTGAGTGGTACGCCCTGGC
LOC_Os10g37034
Os.46592.2.S1_x_at--524--6992Chr10:19499772..19499796 (25 bp)
GTACGCCCTGGCTGAGATGATACGG
LOC_Os10g37034
Os.46592.2.S1_x_at--932--8331Chr10:19499781..19499805 (25 bp)
GGCTGAGATGATACGGACTTTGATC
LOC_Os10g37034
Target Sequence 
TGGCCGCCTTGTGGAGTCCCGTCGTCTCCCCTCACTCCGGAGGAGCGGCACCGCTCATCCCTCGCACGCCCGCCATGACC
AACGAGCAACGAGTGGTCGAGTGCGGAGGTGGTGTCAATGAGGTCAGGCGGTGCGCGGGACGCACGCACGCCGTTTCTGC
TGGGAGAAACGCCGCCGCTCGTCCCTCGCGCGCCTGCCGTGACCGAGGAATTCCTCGGCGAGGTGGCACAGCTTCACTTA
CATGTGAGTGGTACGCCCTGGCTGAGATGATACGGACTTTGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46592.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis