Browse Element(s) Details


Os.4855.1.S1_at

Description gb:AK122154.1
DB_XREF= gi:37991800
TID=Os.4855.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.4855 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033145D02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033145D02, full insert sequence.
FL= gb:AK122154.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5719011/11myosin XI, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g57150Os.16820.1.S1_at10/112+34996907..34998925Tubulin-specific chaperone A, putative, expressed
LOC_Os02g57160Os.11619.1.A1_at11/112+34999045..35003489ABC1 family protein, expressed
LOC_Os02g57170Os.50935.1.S1_at11/112+35005524..35007516expressed protein
LOC_Os02g57180Os.10342.1.S1_at11/112+35007703..35011778NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os02g57180Os.10342.1.S1_s_at11/112+35007703..35011778NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os02g57180Os.7287.1.S1_s_at10/112+35007703..35011778NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os02g57180Os.7287.1.S1_x_at2/112+35007703..35011778NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os02g57190Os.4855.1.S1_at11/112+35022700..35034598myosin XI, putative, expressed
LOC_Os02g57200Os.49569.1.S1_at11/112+35035214..35040570expressed protein
LOC_Os02g57210OsAffx.12678.1.S1_x_at11/112+35047045..35048474hypothetical protein
LOC_Os02g57220Os.18424.1.S1_at11/112+35051067..35056660Actin-related protein 2/3 complex subunit 1B, putative, expressed
LOC_Os02g57230OsAffx.29218.1.S1_s_at8/112+35057895..35061034retrotransposon protein, putative, unclassified
LOC_Os02g57230OsAffx.380.1.S1_at3/112+35057895..35061034retrotransposon protein, putative, unclassified
LOC_Os02g57230OsAffx.29576.2.S1_x_at1/112+35057895..35061034retrotransposon protein, putative, unclassified
LOC_Os02g57230OsAffx.2057.3.S1_at1/112+35057895..35061034retrotransposon protein, putative, unclassified
LOC_Os02g57230OsAffx.13325.1.S1_at1/112+35057895..35061034retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0030048biological_processactin filament-based movement
GO:0005777cellular_componentperoxisome
GO:0016459cellular_componentmyosin
GO:0003774molecular_functionmotor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4855.1.S1_at--419--6731Chr02:35033894..35033918 (25 bp)
GTTCTTAGTAACATGCGGGTGCTGA
LOC_Os02g57190
Os.4855.1.S1_at--165--6191Chr02:35033924..35033948 (25 bp)
GAGGACTCTAATAACGCTGAAAGCA
LOC_Os02g57190
Os.4855.1.S1_at--5--371Chr02:35033967..35034100 (25 bp)
ATAATTCAAGCATCCCGTTCTCAGT
LOC_Os02g57190
Os.4855.1.S1_at--776--7211Chr02:35034099..35034123 (25 bp)
GTCGATGACATCACCAACTCAATTC
LOC_Os02g57190
Os.4855.1.S1_at--941--9291Chr02:35034173..35034197 (25 bp)
TCCCGCCTTCCAGTTTTTACAGGAT
LOC_Os02g57190
Os.4855.1.S1_at--54--5591Chr02:35034207..35034231 (25 bp)
GAAATCTCAGAGCTTTATACCGTTA
LOC_Os02g57190
Os.4855.1.S1_at--577--10151Chr02:35034222..35034246 (25 bp)
TATACCGTTAGATACCTTGTCAGAA
LOC_Os02g57190
Os.4855.1.S1_at--514--9231Chr02:35034278..35034302 (25 bp)
TCCTTTACGCTGGATGGTGTACCCT
LOC_Os02g57190
Os.4855.1.S1_at--799--8611Chr02:35034292..35034316 (25 bp)
TGGTGTACCCTTTCTTTTGTTATAT
LOC_Os02g57190
Os.4855.1.S1_at--575--7931Chr02:35034380..35034404 (25 bp)
GGATTCCTCCCTTACATCTAGGAAA
LOC_Os02g57190
Os.4855.1.S1_at--9--8251Chr02:35034429..35034453 (25 bp)
GGCAAATCATTCTTTTGTAGGGCAA
LOC_Os02g57190
Target Sequence 
GTTCTTAGTAACATGCGGGTGCTGATGACAGAGGACTCTAATAACGCTGAAAGCAGTTCATTTCTGTTGGATGATAATTC
AAGCATCCCGTTCTCAGTCGATGACATCACCAACTCAATTCAGGAGAAGGACTTCACCGATGTCAAACCAGCTGAGGAGC
TACTCGAGAATCCCGCCTTCCAGTTTTTACAGGATTAGGGCTGTGAAATCTCAGAGCTTTATACCGTTAGATACCTTGTC
AGAATATTCCTTGATTTGTTGTAAATTTTTTTCAATCCTTTACGCTGGATGGTGTACCCTTTCTTTTGTTATATTTCCTT
TTCTTTTCCAGCTAGTTTTTTGTAAAATCCTTATAGGTAGTCAATAGGGTTGGGATGGGATTCCTCCCTTACATCTAGGA
AAAGCAATATCTTTTAAAGCAAGGCAGGCAAATCATTCTTTTGTAGGGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4855.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis