Browse Element(s) Details


Os.50630.1.S1_x_at

Description gb:NM_196669.1
DB_XREF= gi:37534697
TID=Os.50630.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.50630 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative nucleolar protein (OSJNBb0040I11.5), mRNA.
PROD=putative nucleolar protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3010011/11Nucleolar protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g30070Os.46449.1.S1_at11/1110+15284817..15286710Sodium/calcium exchanger protein, expressed
LOC_Os10g30070OsAffx.11747.1.S1_x_at3/1110+15284817..15286710Sodium/calcium exchanger protein, expressed
LOC_Os10g30080Os.46676.1.A1_x_at11/1110+15291962..15295273secondary cell wall-related glycosyltransferase family 14, putative, expressed
LOC_Os10g30080Os.51187.1.S1_s_at11/1110+15291962..15295273secondary cell wall-related glycosyltransferase family 14, putative, expressed
LOC_Os10g30080Os.51187.1.S1_at11/1110+15291962..15295273secondary cell wall-related glycosyltransferase family 14, putative, expressed
LOC_Os10g30080OsAffx.13408.1.S1_x_at1/1110+15291962..15295273secondary cell wall-related glycosyltransferase family 14, putative, expressed
LOC_Os10g30090Os.46458.1.S1_at11/1110+15299920..15306465Amino acid permease family protein, expressed
LOC_Os10g30090Os.46458.2.S1_x_at10/1110+15299920..15306465Amino acid permease family protein, expressed
LOC_Os10g30090Os.46458.2.S1_at9/1110+15299920..15306465Amino acid permease family protein, expressed
LOC_Os10g30090Os.21252.1.S1_at1/1110+15299920..15306465Amino acid permease family protein, expressed
LOC_Os10g30100Os.50630.1.S1_x_at11/1110+15308510..15314972Nucleolar protein, putative, expressed
LOC_Os10g30100Os.36273.1.S1_at1/1110+15308510..15314972Nucleolar protein, putative, expressed
LOC_Os10g30109NANA10+15316196..15316562NA
LOC_Os10g30120NANA10+15319073..15319463laccase, putative
LOC_Os10g30130OsAffx.8091.1.S1_at11/1110+15320842..15327031retrotransposon protein, putative, unclassified
LOC_Os10g30140OsAffx.30603.2.S1_at11/1110+15330085..15331936Multicopper oxidase family protein
LOC_Os10g30140OsAffx.30603.2.S1_x_at11/1110+15330085..15331936Multicopper oxidase family protein
LOC_Os10g30140OsAffx.30603.4.S1_x_at2/1110+15330085..15331936Multicopper oxidase family protein
LOC_Os10g30150Os.5338.1.S1_at11/1110+15334244..15335177universal stress protein family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005622cellular_componentintracellular
GO:0003676molecular_functionnucleic acid binding
GO:0008408molecular_function3'-5' exonuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50630.1.S1_x_at--993--8231Chr10:15309056..15309080 (25 bp)
GGCACTTCCTTTCCATAATTTCTGT
LOC_Os10g30100
Os.50630.1.S1_x_at--705--191Chr10:15309039..15309063 (25 bp)
ATTTCTGTGGCGGTGCAAAATCTCC
LOC_Os10g30100
Os.50630.1.S1_x_at--1037--3911Chr10:15309015..15309039 (25 bp)
CGGCCACTAGCATTCCATTGGAAGA
LOC_Os10g30100
Os.50630.1.S1_x_at--39--5251Chr10:15308992..15309016 (25 bp)
GAATCAGTGCGTCCTGAACCAGAAA
LOC_Os10g30100
Os.50630.1.S1_x_at--191--10191Chr10:15308959..15308983 (25 bp)
TATAGTGATCCAGCTTGTCAGACGG
LOC_Os10g30100
Os.50630.1.S1_x_at--574--2951Chr10:15308865..15308889 (25 bp)
AAGGCCACCTTGTACCTGATGACAT
LOC_Os10g30100
Os.50630.1.S1_x_at--1043--5651Chr10:15308845..15308869 (25 bp)
GACATGGAGATGTCTAGGTCCCCTC
LOC_Os10g30100
Os.50630.1.S1_x_at--496--8911Chr10:15308819..15308843 (25 bp)
TGAGCATTCTTCTGCTGGTGCCAAG
LOC_Os10g30100
Os.50630.1.S1_x_at--544--4911Chr10:15308790..15308814 (25 bp)
GCTTCCAGTCACTCATCGAAAGTAG
LOC_Os10g30100
Os.50630.1.S1_x_at--456--5211Chr10:15308728..15308752 (25 bp)
GAATTTAACCACCAGCTGAAGCCTT
LOC_Os10g30100
Os.50630.1.S1_x_at--1031--5411Chr10:15308592..15308616 (25 bp)
GAACCTCAAACCAATTCGGTGCTGG
LOC_Os10g30100
Target Sequence 
GGCACTTCCTTTCCATAATTTCTGTGGCGGTGCAAAATCTCCGGCCACTAGCATTCCATTGGAAGAATCAGTGCGTCCTG
AACCAGAAAGCATCCAGTATAGTGATCCAGCTTGTCAGACGGAAGATGTTATACAGTTGGNNNNNGAAACAGATGGTCCC
CAACCCCCAGAAAATCACAATNAAGATGGACAAGGCCACCTTGTACCTGATGACATGGAGATGTCTAGGTCCCCTCCTGA
GCATTCTTCTGCTGGTGCCAAGCAACGCTTCCAGTCACTCATCGAAAGTAGAAACCAACAACAGAACCACAAGCCACACC
AAGAACCAGAATTTAACCACCAGCTGAAGCCTTTNGATTACGCTGAAGCCAGAAAGAACATAACATTTGGAGAGCGTAAA
GCCGAGAGAATCAAAGACAATGCAGTGGCCAGGGCAATAAACAAGGATTCTGGAGATAAAGGTAGAACCTCAAACCAATT
CGGTGCTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50630.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis