Browse Element(s) Details


Os.5160.1.S1_at

Description gb:AU173917
DB_XREF= gi:13165120
DB_XREF=AU173917
CLONE=S20786
TID=Os.5160.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.5160 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains ESTs AU173916(S20786),AU173917(S20786)~similar to Arabidopsis thaliana chromosome 5, At5g13720~unknown protein (P0047B07.15), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4633010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g46260OsAffx.9045.1.S1_x_at1/117+27599976..27607303retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g46260OsAffx.9045.1.S1_at1/117+27599976..27607303retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g46270NANA7+27608556..27611504retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g46280Os.20617.2.S1_x_at11/117+27613702..27616943Glycosyl hydrolase family 1 protein, expressed
LOC_Os07g46280Os.20617.1.S1_at11/117+27613702..27616943Glycosyl hydrolase family 1 protein, expressed
LOC_Os07g46280Os.20617.2.S1_s_at11/117+27613702..27616943Glycosyl hydrolase family 1 protein, expressed
LOC_Os07g46280Os.9159.2.S1_x_at1/117+27613702..27616943Glycosyl hydrolase family 1 protein, expressed
LOC_Os07g46290OsAffx.28931.1.S1_at11/117+27617319..27618875hypothetical protein
LOC_Os07g46300Os.25569.1.S1_at10/117+27619282..27621942expressed protein
LOC_Os07g46310Os.6595.1.S1_a_at11/117+27622490..27625044CobN/magnesium chelatase family protein
LOC_Os07g46320Os.37215.1.S1_at11/117+27626632..27628275integral membrane protein, putative, expressed
LOC_Os07g46330Os.5160.1.S1_at10/117+27629053..27631630expressed protein
LOC_Os07g46340OsAffx.16733.1.S1_s_at11/117+27633820..27636897expressed protein
LOC_Os07g46340Os.5110.1.S1_at11/117+27633820..27636897expressed protein
LOC_Os07g46340OsAffx.16733.1.S1_at9/117+27633820..27636897expressed protein
LOC_Os07g46350Os.6035.1.S1_at11/117+27637160..27642075Serine carboxypeptidase II-3 precursor, putative, expressed
LOC_Os07g46360Os.30832.1.S1_at11/117+27651329..27652387lactoylglutathione lyase family protein, putative, expressed
LOC_Os07g46360OsAffx.10957.1.S1_x_at1/117+27651329..27652387lactoylglutathione lyase family protein, putative, expressed
LOC_Os07g46370Os.6412.1.S1_at11/117+27654403..27664179WD-40 repeat family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009706cellular_componentchloroplast inner membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5160.1.S1_at--562--331Chr07:27630628..27630652 (25 bp)
ATACTTCTACTGATGTTCCTTCTGA
LOC_Os07g46330
Os.5160.1.S1_at--932--6691Chr07:27630642..27630666 (25 bp)
GTTCCTTCTGAGTCTGACAGAGCTC
LOC_Os07g46330
Os.5160.1.S1_at--514--5651Chr07:27630657..27630681 (25 bp)
GACAGAGCTCTGCAGGGATCATCCT
LOC_Os07g46330
Os.5160.1.S1_at--876--9611Chr07:27631188..27631212 (25 bp)
TCATCGTCATGATCCTTCTGGTGAA
LOC_Os07g46330
Os.5160.1.S1_at--769--7891Chr07:27631251..27631275 (25 bp)
GGTTGGACCTGCTGAGCTACTCGGT
LOC_Os07g46330
Os.5160.1.S1_at--292--8911Chr07:27631263..27631287 (25 bp)
TGAGCTACTCGGTCTGCATCTTCCT
LOC_Os07g46330
Os.5160.1.S1_at--480--2211Chr07:27631314..27631338 (25 bp)
ACAACCTTCACAGGCCTGAACAGGA
LOC_Os07g46330
Os.5160.1.S1_at--549--7991Chr07:27631336..27631360 (25 bp)
GGATGACTCGGTTATGCCAAACTTG
LOC_Os07g46330
Os.5160.1.S1_at--306--5211Chr07:27631441..27631465 (25 bp)
GAATTGTATTAGTACCATCCTGATG
LOC_Os07g46330
Os.5160.1.S1_at--1012--2771NONE
AAGAGAGCAAAGAACCCCTGAACCA
NONE
Os.5160.1.S1_at--674--2931Chr07:27631525..27631549 (25 bp)
AAGGCAAGATCAAGGACAGCTTCAA
LOC_Os07g46330
Target Sequence 
ATACTTCTACTGATGTTCCTTCTGAGTCTGACAGAGCTCTGCAGGGATCATCCTTATTTGGGATGTTTGCTTTAAAGGAA
AGACCAAAGTGGATGAAGATTACCTCCNTGGACGAACTGAAAACCNAAGTAGGGCATGTCATCGTCATGATCCTTCTGGT
GAAGATGTTCGAGAGGAGCAAANTGGTGAAGATAACAACGGGGTTGGACCTGCTGAGCTACTCGGTCTGCATCTTCCTGT
CGTCCGCTTCACTGTACATCCTGCACAACCTTCACAGGCCTGAACAGGATGACTCGGTTATGCCAAACTTGTAAAGTCAT
CGAGAGTTAGGAAAAGAAAAAAAAATCATACCNCCATCAAATCATGAGCTCATGATCTGTAGCNCCGGATGGAATTGTAT
TAGTACCATCCTGATGTGCCNAAAGCANGGGTAAAAAAAAGAGAGCAAAGAACCCCTGAACCANTCTCTNTGTGAAAAGG
CAAGATCAAGGACAGCTTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5160.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis