Browse Element(s) Details


Os.52858.1.S1_at

Description gb:AK069623.1
DB_XREF= gi:32979647
TID=Os.52858.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52858 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023023M18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023023M18, full insert sequence.
FL= gb:AK069623.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4667010/11Zinc finger, C2H2 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g46620Os.22700.1.S1_at11/114+27418970..27424764T-complex protein 1, alpha subunit, putative, expressed
LOC_Os04g46620Os.57487.1.S1_x_at6/114+27418970..27424764T-complex protein 1, alpha subunit, putative, expressed
LOC_Os04g46620Os.57487.1.S1_at2/114+27418970..27424764T-complex protein 1, alpha subunit, putative, expressed
LOC_Os04g46630NANA4+27426521..27428347Beta-expansin 2 precursor, putative, expressed
LOC_Os04g46639NANA4+27429989..27430351hypothetical protein
LOC_Os04g46650Os.2403.1.S1_at10/114+27436573..27437986Beta-expansin 2 precursor, putative, expressed
LOC_Os04g46660Os.51142.1.S1_at11/114+27442456..27443739Cyclin, N-terminal domain containing protein, expressed
LOC_Os04g46670Os.52858.1.S1_at10/114+27446934..27449189Zinc finger, C2H2 type family protein, expressed
LOC_Os04g46680Os.50594.1.S1_at11/114+27456211..27457548Zinc finger, C2H2 type family protein, expressed
LOC_Os04g46690OsAffx.26141.2.S1_at11/114+27460934..27468516hAT family dimerisation domain containing protein
LOC_Os04g46690OsAffx.26141.4.S1_at9/114+27460934..27468516hAT family dimerisation domain containing protein
LOC_Os04g46690OsAffx.26141.3.S1_x_at7/114+27460934..27468516hAT family dimerisation domain containing protein
LOC_Os04g46690OsAffx.26141.4.S1_x_at6/114+27460934..27468516hAT family dimerisation domain containing protein
LOC_Os04g46690Os.38172.1.S1_x_at5/114+27460934..27468516hAT family dimerisation domain containing protein
LOC_Os04g46690Os.43567.1.S1_x_at3/114+27460934..27468516hAT family dimerisation domain containing protein
LOC_Os04g46690Os.53217.1.S1_x_at1/114+27460934..27468516hAT family dimerisation domain containing protein
LOC_Os04g46690Os.29987.1.S1_at1/114+27460934..27468516hAT family dimerisation domain containing protein
LOC_Os04g46700Os.24315.1.S2_at11/114+27471768..27475152expressed protein
LOC_Os04g46700Os.24315.1.S1_at11/114+27471768..27475152expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003676molecular_functionnucleic acid binding
GO:0003700molecular_functiontranscription factor activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52858.1.S1_at--944--8351Chr04:27448594..27448618 (25 bp)
GGCGGCAGCTCGTTTCATCTCGACG
LOC_Os04g46670
Os.52858.1.S1_at--300--4631Chr04:27448651..27448675 (25 bp)
GCGATACCCAGCCAACGGAACAAGG
LOC_Os04g46670
Os.52858.1.S1_at--272--9431Chr04:27448715..27448739 (25 bp)
TCGGGTTAAGCACCGCCGCAGCAGA
LOC_Os04g46670
Os.52858.1.S1_at--606--1711Chr04:27448756..27448780 (25 bp)
ACCACCGTCAAGAGAGCGAGGCTTA
LOC_Os04g46670
Os.52858.1.S1_at--576--4031Chr04:27448772..27448796 (25 bp)
CGAGGCTTAGCGATCTCAAGGACGT
LOC_Os04g46670
Os.52858.1.S1_at--969--8051Chr04:27448809..27448833 (25 bp)
GGAGACGACACCGTGGCTGCAAGTC
LOC_Os04g46670
Os.52858.1.S1_at--517--3991Chr04:27448820..27448844 (25 bp)
CGTGGCTGCAAGTCGGCATTGGCTC
LOC_Os04g46670
Os.52858.1.S1_at--958--9871Chr04:27448923..27448947 (25 bp)
TACATTATTTCCATGCGTTTGCAAT
LOC_Os04g46670
Os.52858.1.S1_at--946--4951Chr04:27448949..27448973 (25 bp)
GCATATATGTTGTTCGCATGAGCAT
LOC_Os04g46670
Os.52858.1.S1_at--1073--9171Chr04:27448983..27449007 (25 bp)
TGCCTTCTTTTTTGTGACTTTTTCT
LOC_Os04g46670
Os.52858.1.S1_at--691--10211NONE
TATTAATCTGTCAAGCTGCGTGATC
NONE
Target Sequence 
GGCGGCAGCTCGTTTCATCTCGACGCGCCACCACCGGTATACATCCCATCGTCGCCGGCGATACCCAGCCAACGGAACAA
GGCTACCGCGACAACCGGCAGCCAGAACGCCAACGACGCGGTCGGGTTAAGCACCGCCGCAGCAGAGGACGAGGCGGACA
GCACCACCGTCAAGAGAGCGAGGCTTAGCGATCTCAAGGACGTGAGCATGGCAGGGGAGACGACACCGTGGCTGCAAGTC
GGCATTGGCTCCTCGTCTCGCGGGGGTGCTGATGATAACGACAAGGAGTGATTGATCTGCGAATTGATCAGTACATACAT
ATATACTGTTACATTATTTCCATGCGTTTGCAATTGCATATATGTTGTTCGCATGAGCATATAAGTATTTGCCTTCTTTT
TTGTGACTTTTTCTTTTCTTTTAGACTTGTAGGTTTTTTTTTCTTCTCAAGATAGTGAGTATGTTTTACAAAGAGGTAAC
ATATGAATTTGGGAAGAGGCAGTAGACTTGTAGGATTTTTTTTTCTTCTGAAGAGAAGCAAGTAGTGAGTATTTTTTCAC
AAGAGGTAATGTATTAATCTGTCAAGCTGCGTGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52858.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis