Browse Element(s) Details


Os.54670.1.S1_at

Description gb:AK106437.1
DB_XREF= gi:32991646
TID=Os.54670.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54670 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-103-D05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-103-D05, full insert sequence.
FL= gb:AK106437.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3804010/11Zinc knuckle family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g38000Os.11297.1.S1_at11/1112+23316456..2331830460S ribosomal protein L2, putative, expressed
LOC_Os12g38000OsAffx.3064.1.S1_at1/1112+23316456..2331830460S ribosomal protein L2, putative, expressed
LOC_Os12g38010OsAffx.7826.2.S1_at11/1112+23318668..23319649Metallothionein-like protein 1, putative, expressed
LOC_Os12g38020OsAffx.22641.1.S1_at8/1112+23321375..23326043retrotransposon protein, putative, unclassified
LOC_Os12g38030OsAffx.22848.4.S1_at2/1112+23332989..23338947retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g38030OsAffx.22848.4.S1_x_at1/1112+23332989..23338947retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g38040Os.54670.1.S1_at10/1112+23342823..23345765Zinc knuckle family protein, expressed
LOC_Os12g38040Os.9279.1.S1_at1/1112+23342823..23345765Zinc knuckle family protein, expressed
LOC_Os12g38064Os.37783.2.S1_x_at11/1112+23349649..23357887Metallothionein-like protein 1, putative, expressed
LOC_Os12g38064OsAffx.7826.1.S1_at11/1112+23349649..23357887Metallothionein-like protein 1, putative, expressed
LOC_Os12g38064Os.37783.1.S1_a_at11/1112+23349649..23357887Metallothionein-like protein 1, putative, expressed
LOC_Os12g38064OsAffx.13220.1.S1_at1/1112+23349649..23357887Metallothionein-like protein 1, putative, expressed
LOC_Os12g38064OsAffx.4897.1.A1_at1/1112+23349649..23357887Metallothionein-like protein 1, putative, expressed
LOC_Os12g38090OsAffx.7828.1.S1_at11/1112+23360442..23361839F-box domain containing protein
LOC_Os12g38100OsAffx.7829.1.S1_at11/1112+23365498..23366323expressed protein
LOC_Os12g38110Os.3382.1.S1_at11/1112+23369158..23375239Importin-beta N-terminal domain containing protein, expressed
LOC_Os12g38110Os.47880.1.A1_at11/1112+23369158..23375239Importin-beta N-terminal domain containing protein, expressed
LOC_Os12g38110Os.22820.1.A1_at5/1112+23369158..23375239Importin-beta N-terminal domain containing protein, expressed
LOC_Os12g38110Os.56154.1.S1_s_at4/1112+23369158..23375239Importin-beta N-terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54670.1.S1_at--848--4791NONE
GCTCGGGCCTGCATGTTTCGGACAG
NONE
Os.54670.1.S1_at--793--5491Chr12:23343298..23343322 (25 bp)
GAACACTCAAGTGGCGAGCCTGGGA
LOC_Os12g38040
Os.54670.1.S1_at--850--8851Chr12:23343251..23343275 (25 bp)
TGATGCTGCGTGTAATGTCGTGCCG
LOC_Os12g38040
Os.54670.1.S1_at--502--4811Chr12:23343097..23343121 (25 bp)
GCTCTGGTCGCGAGAAGTGATGCTT
LOC_Os12g38040
Os.54670.1.S1_at--861--5171Chr12:23343024..23343048 (25 bp)
GCAAGGTAACTGCAATGCCTTCGTC
LOC_Os12g38040
Os.54670.1.S1_at--1151--9391Chr12:23343004..23343028 (25 bp)
TCGTCGAAGATCTGGTTCTCACCAC
LOC_Os12g38040
Os.54670.1.S1_at--951--7891Chr12:23342991..23343015 (25 bp)
GGTTCTCACCACAATTGCAGCCAAA
LOC_Os12g38040
Os.54670.1.S1_at--12--2351Chr12:23342969..23342993 (25 bp)
AAAGAGCTGTGCAGCGCCATCCCTT
LOC_Os12g38040
Os.54670.1.S1_at--282--4631Chr12:23342934..23342958 (25 bp)
GCGATGTCGTCGTTCTGGATGAGAT
LOC_Os12g38040
Os.54670.1.S1_at--913--8891Chr12:23342915..23342939 (25 bp)
TGAGATGCAGCGAAGCCCATCAGCT
LOC_Os12g38040
Os.54670.1.S1_at--924--10511Chr12:23342884..23342908 (25 bp)
TTCACACAGATCATGTAGCGCCCGT
LOC_Os12g38040
Target Sequence 
GCTCGGGCCTGCATGTTTCGGACAGGGATACGATAGAGGAACACTCAAGTGGCGAGCCTGGGAATAGGATGGCGGGGAGG
GGAGATGATGCTGCGTGTAATGTCGTGCCGCGTGTGCTTGCCACGAGCACGGCGCTGGTGGCGGGGAGAGACGTTCTGGC
GACGGGGAAAGATGTGCTGGCGACGGAGAATGGCGTTCTGGCGGCGGGGAAGGATGTGCTGGCAACAGGGGGCGAGGTTG
CTCTGGTCGCGAGAAGTGATGCTTAGCGGTTGGGAAGTGAGGTTCAGGCGACAGGACGATCCGAAGAGGGTAGCAAGGTA
ACTGCAATGCCTTCGTCGAAGATCTGGTTCTCACCACAATTGCAGCCAAAGAGCTGTGCAGCGCCATCCCTTGCAGTCTC
CTGCGATGTCGTCGTTCTGGATGAGATGCAGCGAAGCCCATCAGCTGATCAGTTCACACAGATCATGTAGCGCCCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54670.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis