Browse Element(s) Details

Os.55083.1.S1_at

Description

gb:AK107442.1
DB_XREF= gi:32992651
TID=Os.55083.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55083 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-128-B07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-128-B07, full insert sequence.
FL= gb:AK107442.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g25590	1/11	hypothetical protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g25570	OsAffx.15611.1.S1_at	11/11	6	+	14945394..14948087	hypothetical protein
LOC_Os06g25570	OsAffx.17848.1.S1_at	1/11	6	+	14945394..14948087	hypothetical protein
LOC_Os06g25570	OsAffx.17848.1.S1_x_at	1/11	6	+	14945394..14948087	hypothetical protein
LOC_Os06g25570	OsAffx.17848.2.S1_x_at	1/11	6	+	14945394..14948087	hypothetical protein
LOC_Os06g25570	OsAffx.17848.5.S1_x_at	1/11	6	+	14945394..14948087	hypothetical protein
LOC_Os06g25580	Os.35344.18.S1_x_at	11/11	6	+	14958946..14964967	Transposable element protein, putative, MuDR
LOC_Os06g25580	Os.35344.3.S1_x_at	9/11	6	+	14958946..14964967	Transposable element protein, putative, MuDR
LOC_Os06g25580	OsAffx.22940.5.S1_x_at	3/11	6	+	14958946..14964967	Transposable element protein, putative, MuDR
LOC_Os06g25590	OsAffx.4938.1.S1_at	9/11	6	+	14968520..14969029	hypothetical protein
LOC_Os06g25590	OsAffx.22815.2.S1_at	4/11	6	+	14968520..14969029	hypothetical protein
LOC_Os06g25590	OsAffx.640.1.S1_x_at	1/11	6	+	14968520..14969029	hypothetical protein
LOC_Os06g25590	Os.55083.1.S1_at	1/11	6	+	14968520..14969029	hypothetical protein
LOC_Os06g25600	NA	NA	6	+	14969502..14969858	hypothetical protein
LOC_Os06g25610	OsAffx.31802.2.S1_at	11/11	6	+	14975516..14976790	transposon protein, putative, unclassified
LOC_Os06g25620	Os.46715.1.S1_x_at	1/11	6	+	14980692..14981762	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g25630	OsAffx.20628.2.S1_x_at	1/11	6	+	14983598..14985853	retrotransposon protein, putative, unclassified
LOC_Os06g25630	OsAffx.22171.1.S1_at	1/11	6	+	14983598..14985853	retrotransposon protein, putative, unclassified
LOC_Os06g25640	NA	NA	6	+	14986791..14987186	retrotransposon protein, putative, unclassified
LOC_Os06g25650	OsAffx.22722.1.S1_at	1/11	6	+	14987531..14989775	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g25660	Os.50418.1.S1_at	11/11	6	+	14990042..14993388	transposon protein, putative, unclassified, expressed
LOC_Os06g25660	OsAffx.31802.1.S1_at	4/11	6	+	14990042..14993388	transposon protein, putative, unclassified, expressed

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.55083.1.S1_at--1108--807	2	Chr04:14177799..14177818 (20 bp)	GGAGCTCAATCAATGGCGCCAGTAT	NONE
Os.55083.1.S1_at--512--87	1	Chr02:29245799..29245823 (25 bp)	ATGGCGCCAGTATTAGTGTTTCGGG	NONE
Os.55083.1.S1_at--131--929	1	Chr02:29245765..29245789 (25 bp)	TCCGGTGACGACGACTTGATTTAAT	NONE
Os.55083.1.S1_at--358--897	1	Chr02:29245715..29245739 (25 bp)	TGAAAGAGGTCGAAACTGCGCTTCT	NONE
Os.55083.1.S1_at--509--615	1	Chr02:29245710..29245734 (25 bp)	GAGGTCGAAACTGCGCTTCTTTTGC	NONE
Os.55083.1.S1_at--812--487	4	Chr06:9820936..9820960 (25 bp)	GCTTCTTTTGCCTCCGGTCTTGAGC	NONE
Os.55083.1.S1_at--953--425	6	Chr06:14968938..14968958 (21 bp)	CCGGTCTTGAGCCTTCTAGTTGAGA	LOC_Os06g25590
Os.55083.1.S1_at--1088--891	4	Chr03:26881506..26881529 (24 bp)	TGAGCCTTCTAGTTGAGAGACGAAT	NONE
Os.55083.1.S1_at--425--721	1	Chr02:29245624..29245648 (25 bp)	GTCGTTTGGGTATTCGTTCGTCGAT	NONE
Os.55083.1.S1_at--963--721	1	Chr02:29245605..29245629 (25 bp)	GTCGATCGGCCTCGTGCATGCACGT	NONE
Os.55083.1.S1_at--306--459	1	Chr02:29245538..29245562 (25 bp)	GCGCACACGAGTGCGACTCGGGATT	NONE

Target Sequence

GGAGCTCAATCAATGGCGCCAGTATTAGTGTTTCGGGGAATTTTCCTCCGGTGACGACGACTTGATTTAATGGGAGTAGG
GGCGGATTTGAGGAGGTGAAAGAGGTCGAAACTGCGCTTCTTTTGCCTCCGGTCTTGAGCCTTCTAGTTGAGAGACGAAT
GAGATACGGAGGCGGGAAGCTGGAGGTGTCGTTTGGGTATTCGTTCGTCGATCGGCCTCGTGCATGCACGTGCGAGCGTG
TGGCATGCGCGGGCTGGCACGAGCTGGGTGCGGGCGCACACGAGTGCGACTCGGGATT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis