Browse Element(s) Details


Os.55418.1.S1_at

Description gb:AK108047.1
DB_XREF= gi:32993256
TID=Os.55418.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55418 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-137-F05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-137-F05, full insert sequence.
FL= gb:AK108047.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1247011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g12430OsAffx.18817.1.S1_at11/1111+6938707..6942622hypothetical protein
LOC_Os11g12440OsAffx.25936.7.S1_s_at11/1111+6945550..6948589transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g12440OsAffx.25936.1.S1_s_at11/1111+6945550..6948589transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g12440OsAffx.25936.2.S1_x_at3/1111+6945550..6948589transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g12440OsAffx.25936.5.S1_x_at2/1111+6945550..6948589transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g12450Os.10827.1.S1_x_at10/1111+6951588..6955226transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g12450Os.46055.2.S1_x_at5/1111+6951588..6955226transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g12460OsAffx.18815.1.S1_at11/1111+6958710..6960024Serpin family protein
LOC_Os11g12460OsAffx.18815.1.S1_x_at11/1111+6958710..6960024Serpin family protein
LOC_Os11g12470Os.55418.1.S1_at11/1111+6964096..6966445expressed protein
LOC_Os11g12480Os.50567.1.S1_at11/1111+6970600..6972833F-box domain containing protein, expressed
LOC_Os11g12480OsAffx.12394.1.S1_at1/1111+6970600..6972833F-box domain containing protein, expressed
LOC_Os11g12490OsAffx.30941.2.S1_x_at11/1111+6975205..6981340transposon protein, putative, unclassified
LOC_Os11g12490OsAffx.30941.1.S1_x_at8/1111+6975205..6981340transposon protein, putative, unclassified
LOC_Os11g12490OsAffx.30941.9.S1_x_at8/1111+6975205..6981340transposon protein, putative, unclassified
LOC_Os11g12490OsAffx.30941.5.S1_x_at7/1111+6975205..6981340transposon protein, putative, unclassified
LOC_Os11g12500OsAffx.29755.4.S1_x_at11/1111+6982152..6985432Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os11g12500OsAffx.29755.2.S1_at10/1111+6982152..6985432Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os11g12500OsAffx.29755.2.S1_x_at8/1111+6982152..6985432Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os11g12500OsAffx.29755.3.S1_x_at4/1111+6982152..6985432Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os11g12500Os.44324.1.A1_at3/1111+6982152..6985432Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os11g12510OsAffx.29755.5.S1_x_at11/1111+6986475..6990310hypothetical protein
LOC_Os11g12510OsAffx.29755.1.S1_s_at7/1111+6986475..6990310hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55418.1.S1_at--905--7651Chr11:6965397..6965421 (25 bp)
GGGATGCGGTTTACTACTCAGTTTA
LOC_Os11g12470
Os.55418.1.S1_at--341--5311Chr11:6965349..6965373 (25 bp)
GAAGGACTGTCCATGTGACATCCAT
LOC_Os11g12470
Os.55418.1.S1_at--1019--971Chr11:6965299..6965323 (25 bp)
AGGAGGTCACTCTGTGTCAGCTCTA
LOC_Os11g12470
Os.55418.1.S1_at--505--9971Chr11:6965264..6965288 (25 bp)
TACCATTGTTCCTGACACCATTGTC
LOC_Os11g12470
Os.55418.1.S1_at--440--9551Chr11:6965223..6965247 (25 bp)
TCTATCTTAGTCAATACCACCTCAG
LOC_Os11g12470
Os.55418.1.S1_at--408--91Chr11:6965146..6965170 (25 bp)
ATTCCAGGTCCTTATAGCATCATGT
LOC_Os11g12470
Os.55418.1.S1_at--130--8711Chr11:6965124..6965148 (25 bp)
TGTGCCATATCATAACCTGTTGCTC
LOC_Os11g12470
Os.55418.1.S1_at--983--6671Chr11:6964771..6965130 (25 bp)
GTTGCTCTCCTGCATACTGGAACAA
LOC_Os11g12470
Os.55418.1.S1_at--110--291Chr11:6964264..6964288 (25 bp)
ATAGGTCACTGCACCATGATGGGTT
LOC_Os11g12470
Os.55418.1.S1_at--340--711Chr11:6964249..6964273 (25 bp)
ATGATGGGTTACTGCCGCCTGGTTT
LOC_Os11g12470
Os.55418.1.S1_at--1011--6831Chr11:6964228..6964252 (25 bp)
GTTTCCCGACTGCTTTTATATCTAT
LOC_Os11g12470
Target Sequence 
GGGATGCGGTTTACTACTCAGTTTACAGGCTAGCTGATCTTATGCTGGGAAGGACTGTCCATGTGACATCCATAGATGGC
AATGCACTCTTCATTGGTAGGAGGTCACTCTGTGTCAGCTCTAAGGCGTTCCCTACCATTGTTCCTGACACCATTGTCAT
GCCAGACACCAAAATCTATCTTAGTCAATACCACCTCAGTAATGGCACATTATCACAAGCAACAGATGGAGTAATTGCAG
AAGAAAAAGATATTCCAGGTCCTTATAGCATCATGTGCCATATCATAACCTGTTGCTCTCCTGCATACTGGAACAAAGGG
AAGATATCATGTAAGGAGTTGCCCACATGGAGGGTGAAGAAAAAATTTCGTTTCGGGGCATAAATAGGTCACTGCACCAT
GATGGGTTACTGCCGCCTGGTTTCCCGACTGCTTTTATATCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55418.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis