Browse Element(s) Details


Os.55551.1.S1_at

Description gb:AK108298.1
DB_XREF= gi:32993507
TID=Os.55551.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55551 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-141-E09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-141-E09, full insert sequence.
FL= gb:AK108298.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3454011/11TPR Domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g34500Os.23140.1.S1_at11/112+20670996..20676398expressed protein
LOC_Os02g34510Os.5911.1.S1_at11/112+20679728..20681922Vacuolar ATP synthase 16 kDa proteolipid subunit, putative, expressed
LOC_Os02g34520NANA2+20683402..20688269retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os02g34530OsAffx.12349.1.S1_at11/112+20694520..20696830Thioredoxin family protein, expressed
LOC_Os02g34540Os.55551.1.S1_at11/112+20697850..20699039TPR Domain containing protein, expressed
LOC_Os02g34550OsAffx.17848.2.S1_at10/112+20702585..20709351Transposable element protein, putative, MuDR
LOC_Os02g34550OsAffx.17848.2.S1_x_at10/112+20702585..20709351Transposable element protein, putative, MuDR
LOC_Os02g34550OsAffx.17848.4.S1_x_at6/112+20702585..20709351Transposable element protein, putative, MuDR
LOC_Os02g34550OsAffx.17848.1.S1_at5/112+20702585..20709351Transposable element protein, putative, MuDR
LOC_Os02g34550OsAffx.17848.3.S1_x_at4/112+20702585..20709351Transposable element protein, putative, MuDR
LOC_Os02g34550OsAffx.17848.5.S1_x_at4/112+20702585..20709351Transposable element protein, putative, MuDR
LOC_Os02g34550Os.54363.1.S1_at3/112+20702585..20709351Transposable element protein, putative, MuDR
LOC_Os02g34550OsAffx.17848.1.S1_x_at3/112+20702585..20709351Transposable element protein, putative, MuDR
LOC_Os02g34550OsAffx.17848.4.S1_at2/112+20702585..20709351Transposable element protein, putative, MuDR
LOC_Os02g34560Os.21046.1.S1_at11/112+20712022..20716037Neutral/alkaline invertase, putative, expressed
LOC_Os02g34570Os.53185.1.S1_at11/112+20722469..207257703' exoribonuclease family, domain 2 containing protein, expressed
LOC_Os02g34570Os.3282.2.S1_x_at1/112+20722469..207257703' exoribonuclease family, domain 2 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55551.1.S1_at--435--7551Chr02:20698254..20698278 (25 bp)
GTGGCCGTGAACAACAAGGCGCTGT
LOC_Os02g34540
Os.55551.1.S1_at--571--2951Chr02:20698239..20698263 (25 bp)
AAGGCGCTGTGCCTCATGTACTCGC
LOC_Os02g34540
Os.55551.1.S1_at--1081--5431Chr02:20698132..20698156 (25 bp)
GAACCTGTGCAGCATGTACGAGCTC
LOC_Os02g34540
Os.55551.1.S1_at--1092--9711Chr02:20698085..20698109 (25 bp)
TCAAGCGCAGCCTCACCGACTGGAT
LOC_Os02g34540
Os.55551.1.S1_at--1113--3151Chr02:20698007..20698031 (25 bp)
AATTGTTGGAATTCTGTTCTTCAAA
LOC_Os02g34540
Os.55551.1.S1_at--980--3151Chr02:20697984..20698008 (25 bp)
AATTCGCTTGAATTTGTGTGAAAGA
LOC_Os02g34540
Os.55551.1.S1_at--968--2951Chr02:20697919..20697943 (25 bp)
AATGGGTTTCAGTTGATTGTCCTAC
LOC_Os02g34540
Os.55551.1.S1_at--705--3431Chr02:20697910..20697934 (25 bp)
CAGTTGATTGTCCTACCTGGGATCA
LOC_Os02g34540
Os.55551.1.S1_at--626--9971Chr02:20697897..20697921 (25 bp)
TACCTGGGATCAATAGCTTTCTGTT
LOC_Os02g34540
Os.55551.1.S1_at--1069--291Chr02:20697885..20697909 (25 bp)
ATAGCTTTCTGTTGTTGCTCAATTA
LOC_Os02g34540
Os.55551.1.S1_at--747--251Chr02:20697860..20697884 (25 bp)
ATATCGATATATTACTCTTGTGAAT
LOC_Os02g34540
Target Sequence 
GTGGCCGTGAACAACAAGGCGCTGTGCCTCATGTACTCGCGCGACCTCGGCGACGCGATCAAGGTGCTCGAGGCGGCGCT
GGAGGGCCACCCGACGGCGGCGTTGAACGAGACGGTGGTGGTGAACCTGTGCAGCATGTACGAGCTCGCCTTCGTCAACC
ACGCCGACGTCAAGCGCAGCCTCACCGACTGGATCGCCAGGGTCGCCCCCGACGACTTCGACCCCTCCTGCACTCGCATG
TAGGGGGAATTGTTGGAATTCTGTTCTTCAAATTCGCTTGAATTTGTGTGAAAGATTTGCTGAAATTGGGATGTACAATT
TGGGGGTTAGCAAACAATGGGTTTCAGTTGATTGTCCTACCTGGGATCAATAGCTTTCTGTTGTTGCTCAATTAATATCG
ATATATTACTCTTGTGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55551.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis